miRNA display CGI


Results 21 - 40 of 115 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29145 5' -61.7 NC_006146.1 + 167843 0.69 0.48664
Target:  5'- -gGGCuCCCCcUCACGGguGGGCgcucagaucGGCGCg -3'
miRNA:   3'- caCCG-GGGGuAGUGCU--UCCG---------CCGCGa -5'
29145 5' -61.7 NC_006146.1 + 11399 0.69 0.47751
Target:  5'- uUGGCCCCUGggaCAuCGAAGGUGGaGCa -3'
miRNA:   3'- cACCGGGGGUa--GU-GCUUCCGCCgCGa -5'
29145 5' -61.7 NC_006146.1 + 167894 0.72 0.344798
Target:  5'- -cGGCCCggggaCCcUCGCGggGGCaccGGCGCg -3'
miRNA:   3'- caCCGGG-----GGuAGUGCuuCCG---CCGCGa -5'
29145 5' -61.7 NC_006146.1 + 46440 0.75 0.2244
Target:  5'- -gGGCCCCCAg---GAAGGCGGCGg- -3'
miRNA:   3'- caCCGGGGGUagugCUUCCGCCGCga -5'
29145 5' -61.7 NC_006146.1 + 167169 0.67 0.591535
Target:  5'- -gGGCCUUCGggACgGGAGGcCGGCGCg -3'
miRNA:   3'- caCCGGGGGUagUG-CUUCC-GCCGCGa -5'
29145 5' -61.7 NC_006146.1 + 53847 0.68 0.543003
Target:  5'- uGUGGUCCCgGagGCGGuAGGCGaCGCUg -3'
miRNA:   3'- -CACCGGGGgUagUGCU-UCCGCcGCGA- -5'
29145 5' -61.7 NC_006146.1 + 1486 0.7 0.454178
Target:  5'- aGUGGCCUCCugacCAUGGcagccggccucguuuGGGUGGUGCUg -3'
miRNA:   3'- -CACCGGGGGua--GUGCU---------------UCCGCCGCGA- -5'
29145 5' -61.7 NC_006146.1 + 56828 0.76 0.194569
Target:  5'- cUGGCCCCCGaggcggccUCuggcgGCGggGGCGGCaGCUu -3'
miRNA:   3'- cACCGGGGGU--------AG-----UGCuuCCGCCG-CGA- -5'
29145 5' -61.7 NC_006146.1 + 38975 0.68 0.533443
Target:  5'- -gGGCCCCCAgacucUCGCaGAGGgGGCa-- -3'
miRNA:   3'- caCCGGGGGU-----AGUGcUUCCgCCGcga -5'
29145 5' -61.7 NC_006146.1 + 128794 0.77 0.167038
Target:  5'- -aGGCCCUCGUagucgugcgccgucCGCGAAGGaCGGCGCg -3'
miRNA:   3'- caCCGGGGGUA--------------GUGCUUCC-GCCGCGa -5'
29145 5' -61.7 NC_006146.1 + 56561 0.69 0.47751
Target:  5'- -aGGCCCCCGUCcaccucCGucagGGGCGGCcggGCg -3'
miRNA:   3'- caCCGGGGGUAGu-----GCu---UCCGCCG---CGa -5'
29145 5' -61.7 NC_006146.1 + 168775 0.69 0.48664
Target:  5'- -gGGCuCCCCcUCACGGguGGGCgcucagaucGGCGCg -3'
miRNA:   3'- caCCG-GGGGuAGUGCU--UCCG---------CCGCGa -5'
29145 5' -61.7 NC_006146.1 + 66547 0.71 0.397074
Target:  5'- -gGGCCCCgaugucuuugaucuUGUgGCGcAGGCGGCGCa -3'
miRNA:   3'- caCCGGGG--------------GUAgUGCuUCCGCCGCGa -5'
29145 5' -61.7 NC_006146.1 + 168826 0.72 0.344798
Target:  5'- -cGGCCCggggaCCcUCGCGggGGCaccGGCGCg -3'
miRNA:   3'- caCCGGG-----GGuAGUGCuuCCG---CCGCGa -5'
29145 5' -61.7 NC_006146.1 + 150480 0.72 0.330181
Target:  5'- aGUGGCCCCCugguagccGUCccuguCGGAGGCGGaggGCa -3'
miRNA:   3'- -CACCGGGGG--------UAGu----GCUUCCGCCg--CGa -5'
29145 5' -61.7 NC_006146.1 + 53193 0.75 0.2244
Target:  5'- -cGGCCCCgGccUugGggGGCGGCGUg -3'
miRNA:   3'- caCCGGGGgUa-GugCuuCCGCCGCGa -5'
29145 5' -61.7 NC_006146.1 + 68089 0.67 0.600365
Target:  5'- -aGaGCCCCCG-CGCGAuccagguGGGCGGCcaGCc -3'
miRNA:   3'- caC-CGGGGGUaGUGCU-------UCCGCCG--CGa -5'
29145 5' -61.7 NC_006146.1 + 168101 0.67 0.591535
Target:  5'- -gGGCCUUCGggACgGGAGGcCGGCGCg -3'
miRNA:   3'- caCCGGGGGUagUG-CUUCC-GCCGCGa -5'
29145 5' -61.7 NC_006146.1 + 127844 0.68 0.571998
Target:  5'- cUGGCaCCCC-UCAacCGccAGGCGGCGUa -3'
miRNA:   3'- cACCG-GGGGuAGU--GCu-UCCGCCGCGa -5'
29145 5' -61.7 NC_006146.1 + 95077 0.68 0.546843
Target:  5'- --uGCCCCUGgugCAugucccgcagggccuCGAAGGCGGCGCc -3'
miRNA:   3'- cacCGGGGGUa--GU---------------GCUUCCGCCGCGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.