miRNA display CGI


Results 21 - 40 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29145 5' -61.7 NC_006146.1 + 20192 0.7 0.450643
Target:  5'- -gGGCCCCCGggggCGCaGGAGGCuGgGCa -3'
miRNA:   3'- caCCGGGGGUa---GUG-CUUCCGcCgCGa -5'
29145 5' -61.7 NC_006146.1 + 21106 0.66 0.650593
Target:  5'- uGUGGCCCCCAUCucccUGGAGGCc----- -3'
miRNA:   3'- -CACCGGGGGUAGu---GCUUCCGccgcga -5'
29145 5' -61.7 NC_006146.1 + 27331 0.67 0.58175
Target:  5'- cUGGCCCuCCAaaaACaGcGGGUGGCGCg -3'
miRNA:   3'- cACCGGG-GGUag-UG-CuUCCGCCGCGa -5'
29145 5' -61.7 NC_006146.1 + 30130 0.69 0.505143
Target:  5'- -aGcGCCCCCAUgCAgGggGGUGG-GCa -3'
miRNA:   3'- caC-CGGGGGUA-GUgCuuCCGCCgCGa -5'
29145 5' -61.7 NC_006146.1 + 32851 0.73 0.282662
Target:  5'- -cGGCCUCCcccccCAUGAagcGGGCGGCGCg -3'
miRNA:   3'- caCCGGGGGua---GUGCU---UCCGCCGCGa -5'
29145 5' -61.7 NC_006146.1 + 38975 0.68 0.533443
Target:  5'- -gGGCCCCCAgacucUCGCaGAGGgGGCa-- -3'
miRNA:   3'- caCCGGGGGU-----AGUGcUUCCgCCGcga -5'
29145 5' -61.7 NC_006146.1 + 40374 0.66 0.689784
Target:  5'- -aGGCCCCCugGUCGCcgcc-CGGCGCg -3'
miRNA:   3'- caCCGGGGG--UAGUGcuuccGCCGCGa -5'
29145 5' -61.7 NC_006146.1 + 40541 0.7 0.450643
Target:  5'- uUGGUCUgCAgcagggUCAUGAAGGUGGUGCg -3'
miRNA:   3'- cACCGGGgGU------AGUGCUUCCGCCGCGa -5'
29145 5' -61.7 NC_006146.1 + 41207 0.71 0.391379
Target:  5'- -aGGCgCCCCAUC-CGcGGGCacugGGCGCg -3'
miRNA:   3'- caCCG-GGGGUAGuGCuUCCG----CCGCGa -5'
29145 5' -61.7 NC_006146.1 + 44715 0.67 0.630886
Target:  5'- cGUGGCCCCCG-CugGccGGCcugaugcgguGGcCGCg -3'
miRNA:   3'- -CACCGGGGGUaGugCuuCCG----------CC-GCGa -5'
29145 5' -61.7 NC_006146.1 + 45169 0.68 0.55262
Target:  5'- -aGGCCUCgGaauCGgcGGCGGCGCUc -3'
miRNA:   3'- caCCGGGGgUaguGCuuCCGCCGCGA- -5'
29145 5' -61.7 NC_006146.1 + 45561 0.66 0.640742
Target:  5'- cUGGCCUCCGcgaggagcUCGCGcagccAGGCGGC-CUg -3'
miRNA:   3'- cACCGGGGGU--------AGUGCu----UCCGCCGcGA- -5'
29145 5' -61.7 NC_006146.1 + 46440 0.75 0.2244
Target:  5'- -gGGCCCCCAg---GAAGGCGGCGg- -3'
miRNA:   3'- caCCGGGGGUagugCUUCCGCCGCga -5'
29145 5' -61.7 NC_006146.1 + 47753 0.66 0.680033
Target:  5'- cUGGCCCUgGggACGGAGaGCGGC-CUc -3'
miRNA:   3'- cACCGGGGgUagUGCUUC-CGCCGcGA- -5'
29145 5' -61.7 NC_006146.1 + 48578 0.66 0.667304
Target:  5'- -cGGCCCCCuggCACaagagccagacgauGggGGUGGCa-- -3'
miRNA:   3'- caCCGGGGGua-GUG--------------CuuCCGCCGcga -5'
29145 5' -61.7 NC_006146.1 + 48835 0.69 0.514508
Target:  5'- -aGGCCUUCAgcugCuccuCGGAGGCGGgCGCg -3'
miRNA:   3'- caCCGGGGGUa---Gu---GCUUCCGCC-GCGa -5'
29145 5' -61.7 NC_006146.1 + 49425 0.66 0.670246
Target:  5'- -cGGCCCCCAcgAUGGAccCGGCGUUg -3'
miRNA:   3'- caCCGGGGGUagUGCUUccGCCGCGA- -5'
29145 5' -61.7 NC_006146.1 + 51251 0.68 0.533443
Target:  5'- aUGGCCCUUGUCcUGAucucccggaGGGUGGCGUUg -3'
miRNA:   3'- cACCGGGGGUAGuGCU---------UCCGCCGCGA- -5'
29145 5' -61.7 NC_006146.1 + 51978 0.66 0.680033
Target:  5'- -aGGUCUCCggCAUGcGGGCcgGGCGCg -3'
miRNA:   3'- caCCGGGGGuaGUGCuUCCG--CCGCGa -5'
29145 5' -61.7 NC_006146.1 + 52969 0.69 0.48664
Target:  5'- aUGGCCCUC--CGCG-GGGCGGgGCg -3'
miRNA:   3'- cACCGGGGGuaGUGCuUCCGCCgCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.