miRNA display CGI


Results 21 - 40 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29145 5' -61.7 NC_006146.1 + 66547 0.71 0.397074
Target:  5'- -gGGCCCCgaugucuuugaucuUGUgGCGcAGGCGGCGCa -3'
miRNA:   3'- caCCGGGG--------------GUAgUGCuUCCGCCGCGa -5'
29145 5' -61.7 NC_006146.1 + 65725 0.71 0.399531
Target:  5'- -cGGCCCCgGUCACu--GGaCGGUGCg -3'
miRNA:   3'- caCCGGGGgUAGUGcuuCC-GCCGCGa -5'
29145 5' -61.7 NC_006146.1 + 18970 0.7 0.433201
Target:  5'- -cGGCCCCUAga--GAGGGCGGCa-- -3'
miRNA:   3'- caCCGGGGGUagugCUUCCGCCGcga -5'
29145 5' -61.7 NC_006146.1 + 120036 0.7 0.433201
Target:  5'- -gGGCacagaCCCcgCGCGGAgacuGGUGGCGCUg -3'
miRNA:   3'- caCCGg----GGGuaGUGCUU----CCGCCGCGA- -5'
29145 5' -61.7 NC_006146.1 + 139399 0.7 0.433201
Target:  5'- -aGGCCCCCAcggCGcCGggGGaGGUGCc -3'
miRNA:   3'- caCCGGGGGUa--GU-GCuuCCgCCGCGa -5'
29145 5' -61.7 NC_006146.1 + 64410 0.7 0.441873
Target:  5'- uUGGCCCCCGUgcaCAUGAuacuugGGGUcucGGCGCc -3'
miRNA:   3'- cACCGGGGGUA---GUGCU------UCCG---CCGCGa -5'
29145 5' -61.7 NC_006146.1 + 20192 0.7 0.450643
Target:  5'- -gGGCCCCCGggggCGCaGGAGGCuGgGCa -3'
miRNA:   3'- caCCGGGGGUa---GUG-CUUCCGcCgCGa -5'
29145 5' -61.7 NC_006146.1 + 40541 0.7 0.450643
Target:  5'- uUGGUCUgCAgcagggUCAUGAAGGUGGUGCg -3'
miRNA:   3'- cACCGGGgGU------AGUGCUUCCGCCGCGa -5'
29145 5' -61.7 NC_006146.1 + 74462 0.7 0.450643
Target:  5'- --uGCCCCCAUggccCACGAuggccuuGaGCGGCGCUg -3'
miRNA:   3'- cacCGGGGGUA----GUGCUu------C-CGCCGCGA- -5'
29145 5' -61.7 NC_006146.1 + 1486 0.7 0.454178
Target:  5'- aGUGGCCUCCugacCAUGGcagccggccucguuuGGGUGGUGCUg -3'
miRNA:   3'- -CACCGGGGGua--GUGCU---------------UCCGCCGCGA- -5'
29145 5' -61.7 NC_006146.1 + 11399 0.69 0.47751
Target:  5'- uUGGCCCCUGggaCAuCGAAGGUGGaGCa -3'
miRNA:   3'- cACCGGGGGUa--GU-GCUUCCGCCgCGa -5'
29145 5' -61.7 NC_006146.1 + 102806 0.69 0.47751
Target:  5'- cUGGCCgCCCAccuggaucgCGCGggGGCucuGCGCUu -3'
miRNA:   3'- cACCGG-GGGUa--------GUGCuuCCGc--CGCGA- -5'
29145 5' -61.7 NC_006146.1 + 56561 0.69 0.47751
Target:  5'- -aGGCCCCCGUCcaccucCGucagGGGCGGCcggGCg -3'
miRNA:   3'- caCCGGGGGUAGu-----GCu---UCCGCCG---CGa -5'
29145 5' -61.7 NC_006146.1 + 167843 0.69 0.48664
Target:  5'- -gGGCuCCCCcUCACGGguGGGCgcucagaucGGCGCg -3'
miRNA:   3'- caCCG-GGGGuAGUGCU--UCCG---------CCGCGa -5'
29145 5' -61.7 NC_006146.1 + 128528 0.69 0.48664
Target:  5'- -gGGCgCCCC-UCGCccacccuGGCGGCGCg -3'
miRNA:   3'- caCCG-GGGGuAGUGcuu----CCGCCGCGa -5'
29145 5' -61.7 NC_006146.1 + 52969 0.69 0.48664
Target:  5'- aUGGCCCUC--CGCG-GGGCGGgGCg -3'
miRNA:   3'- cACCGGGGGuaGUGCuUCCGCCgCGa -5'
29145 5' -61.7 NC_006146.1 + 941 0.69 0.48664
Target:  5'- -cGGCCuCCCGUCcCGAAGGCccuGGCa-- -3'
miRNA:   3'- caCCGG-GGGUAGuGCUUCCG---CCGcga -5'
29145 5' -61.7 NC_006146.1 + 2805 0.69 0.48664
Target:  5'- -cGGCCuCCCGUCcCGAAGGCccuGGCa-- -3'
miRNA:   3'- caCCGG-GGGUAGuGCUUCCG---CCGcga -5'
29145 5' -61.7 NC_006146.1 + 1873 0.69 0.48664
Target:  5'- -cGGCCuCCCGUCcCGAAGGCccuGGCa-- -3'
miRNA:   3'- caCCGG-GGGUAGuGCUUCCG---CCGcga -5'
29145 5' -61.7 NC_006146.1 + 3737 0.69 0.48664
Target:  5'- -cGGCCuCCCGUCcCGAAGGCccuGGCa-- -3'
miRNA:   3'- caCCGG-GGGUAGuGCUUCCG---CCGcga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.