miRNA display CGI


Results 21 - 40 of 115 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29145 5' -61.7 NC_006146.1 + 48578 0.66 0.667304
Target:  5'- -cGGCCCCCuggCACaagagccagacgauGggGGUGGCa-- -3'
miRNA:   3'- caCCGGGGGua-GUG--------------CuuCCGCCGcga -5'
29145 5' -61.7 NC_006146.1 + 122636 0.66 0.66043
Target:  5'- -gGGCCCUCuuUCGCGccaggacGGCGGCGg- -3'
miRNA:   3'- caCCGGGGGu-AGUGCuu-----CCGCCGCga -5'
29145 5' -61.7 NC_006146.1 + 13270 0.66 0.66043
Target:  5'- cUGGUgCCCAagACccAGGCGGUGCc -3'
miRNA:   3'- cACCGgGGGUagUGcuUCCGCCGCGa -5'
29145 5' -61.7 NC_006146.1 + 100759 0.66 0.66043
Target:  5'- -cGGCCaggagCCAg-GCGAAGGCGGCa-- -3'
miRNA:   3'- caCCGGg----GGUagUGCUUCCGCCGcga -5'
29145 5' -61.7 NC_006146.1 + 152038 0.66 0.658464
Target:  5'- -aGGCCCCCG-CACGuccaccaccccGGCaGCGCc -3'
miRNA:   3'- caCCGGGGGUaGUGCuu---------CCGcCGCGa -5'
29145 5' -61.7 NC_006146.1 + 53860 0.66 0.657481
Target:  5'- gGUGGCCCUgugCAUCaacaccuacugggaGCGGcgGGGCGGCugGCUu -3'
miRNA:   3'- -CACCGGGG---GUAG--------------UGCU--UCCGCCG--CGA- -5'
29145 5' -61.7 NC_006146.1 + 166001 0.66 0.650593
Target:  5'- -gGGUCCggcuCUGUCACc-AGGCGGCGCa -3'
miRNA:   3'- caCCGGG----GGUAGUGcuUCCGCCGCGa -5'
29145 5' -61.7 NC_006146.1 + 14666 0.66 0.650593
Target:  5'- -cGGCaCCCCGUcCACGGccgAGGgGGCccGCg -3'
miRNA:   3'- caCCG-GGGGUA-GUGCU---UCCgCCG--CGa -5'
29145 5' -61.7 NC_006146.1 + 21106 0.66 0.650593
Target:  5'- uGUGGCCCCCAUCucccUGGAGGCc----- -3'
miRNA:   3'- -CACCGGGGGUAGu---GCUUCCGccgcga -5'
29145 5' -61.7 NC_006146.1 + 151582 0.66 0.650593
Target:  5'- -cGGCCugguugccguagCCCAUgAUGGA-GCGGCGCg -3'
miRNA:   3'- caCCGG------------GGGUAgUGCUUcCGCCGCGa -5'
29145 5' -61.7 NC_006146.1 + 45561 0.66 0.640742
Target:  5'- cUGGCCUCCGcgaggagcUCGCGcagccAGGCGGC-CUg -3'
miRNA:   3'- cACCGGGGGU--------AGUGCu----UCCGCCGcGA- -5'
29145 5' -61.7 NC_006146.1 + 44715 0.67 0.630886
Target:  5'- cGUGGCCCCCG-CugGccGGCcugaugcgguGGcCGCg -3'
miRNA:   3'- -CACCGGGGGUaGugCuuCCG----------CC-GCGa -5'
29145 5' -61.7 NC_006146.1 + 73033 0.67 0.630886
Target:  5'- -aGGCCCUCGUucCACGGcccgGGGuCGGCGg- -3'
miRNA:   3'- caCCGGGGGUA--GUGCU----UCC-GCCGCga -5'
29145 5' -61.7 NC_006146.1 + 56240 0.67 0.630886
Target:  5'- -gGGUCCgCGgggGCGGAGGCGGgGCc -3'
miRNA:   3'- caCCGGGgGUag-UGCUUCCGCCgCGa -5'
29145 5' -61.7 NC_006146.1 + 3363 0.67 0.6299
Target:  5'- cGUGGCCuCCCAggagaggggC-CGggGGCgcggcccGGCGCc -3'
miRNA:   3'- -CACCGG-GGGUa--------GuGCuuCCG-------CCGCGa -5'
29145 5' -61.7 NC_006146.1 + 568 0.67 0.6299
Target:  5'- cGUGGCCuCCCAggagaggggC-CGggGGCgcggcccGGCGCc -3'
miRNA:   3'- -CACCGG-GGGUa--------GuGCuuCCG-------CCGCGa -5'
29145 5' -61.7 NC_006146.1 + 1499 0.67 0.6299
Target:  5'- cGUGGCCuCCCAggagaggggC-CGggGGCgcggcccGGCGCc -3'
miRNA:   3'- -CACCGG-GGGUa--------GuGCuuCCG-------CCGCGa -5'
29145 5' -61.7 NC_006146.1 + 2431 0.67 0.6299
Target:  5'- cGUGGCCuCCCAggagaggggC-CGggGGCgcggcccGGCGCc -3'
miRNA:   3'- -CACCGG-GGGUa--------GuGCuuCCG-------CCGCGa -5'
29145 5' -61.7 NC_006146.1 + 95361 0.67 0.624971
Target:  5'- uGUGGCCCCCGUUaccagGCaguccaucgugugguGAAGGCagcucacgcuGGUGCUc -3'
miRNA:   3'- -CACCGGGGGUAG-----UG---------------CUUCCG----------CCGCGA- -5'
29145 5' -61.7 NC_006146.1 + 127057 0.67 0.621029
Target:  5'- -aGGCCCUCga-GCu--GGCGGCGCg -3'
miRNA:   3'- caCCGGGGGuagUGcuuCCGCCGCGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.