miRNA display CGI


Results 41 - 60 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29145 5' -61.7 NC_006146.1 + 128460 0.67 0.621029
Target:  5'- -cGGCCgCCAU-GCu--GGCGGCGCg -3'
miRNA:   3'- caCCGGgGGUAgUGcuuCCGCCGCGa -5'
29145 5' -61.7 NC_006146.1 + 137594 0.67 0.611181
Target:  5'- -cGGagCCCCAggacCGAGcGGCGGCGCa -3'
miRNA:   3'- caCCg-GGGGUagu-GCUU-CCGCCGCGa -5'
29145 5' -61.7 NC_006146.1 + 137472 0.67 0.611181
Target:  5'- -cGGagCCCCAggacCGAGcGGCGGCGCa -3'
miRNA:   3'- caCCg-GGGGUagu-GCUU-CCGCCGCGa -5'
29145 5' -61.7 NC_006146.1 + 113695 0.67 0.611181
Target:  5'- -cGGCCUCCGgccCGgGGAcGGCGGCGg- -3'
miRNA:   3'- caCCGGGGGUa--GUgCUU-CCGCCGCga -5'
29145 5' -61.7 NC_006146.1 + 106037 0.67 0.611181
Target:  5'- cGUGGCCgCCCAUC-CGGAcauuggagccuGGCagaaGGUGCa -3'
miRNA:   3'- -CACCGG-GGGUAGuGCUU-----------CCG----CCGCGa -5'
29145 5' -61.7 NC_006146.1 + 98320 0.67 0.611181
Target:  5'- cGUGGCCgUCuggCACG-GGGCcgGGCGCg -3'
miRNA:   3'- -CACCGGgGGua-GUGCuUCCG--CCGCGa -5'
29145 5' -61.7 NC_006146.1 + 71481 0.67 0.611181
Target:  5'- -gGGCCUgCCGUUugGccGGUGGUGCc -3'
miRNA:   3'- caCCGGG-GGUAGugCuuCCGCCGCGa -5'
29145 5' -61.7 NC_006146.1 + 68089 0.67 0.600365
Target:  5'- -aGaGCCCCCG-CGCGAuccagguGGGCGGCcaGCc -3'
miRNA:   3'- caC-CGGGGGUaGUGCU-------UCCGCCG--CGa -5'
29145 5' -61.7 NC_006146.1 + 167169 0.67 0.591535
Target:  5'- -gGGCCUUCGggACgGGAGGcCGGCGCg -3'
miRNA:   3'- caCCGGGGGUagUG-CUUCC-GCCGCGa -5'
29145 5' -61.7 NC_006146.1 + 169965 0.67 0.591535
Target:  5'- -gGGCCUUCGggACgGGAGGcCGGCGCg -3'
miRNA:   3'- caCCGGGGGUagUG-CUUCC-GCCGCGa -5'
29145 5' -61.7 NC_006146.1 + 98667 0.67 0.591535
Target:  5'- cUGGUCCCCGugccuUCACGcgcaguGGGUGGgGCc -3'
miRNA:   3'- cACCGGGGGU-----AGUGCu-----UCCGCCgCGa -5'
29145 5' -61.7 NC_006146.1 + 169033 0.67 0.591535
Target:  5'- -gGGCCUUCGggACgGGAGGcCGGCGCg -3'
miRNA:   3'- caCCGGGGGUagUG-CUUCC-GCCGCGa -5'
29145 5' -61.7 NC_006146.1 + 168101 0.67 0.591535
Target:  5'- -gGGCCUUCGggACgGGAGGcCGGCGCg -3'
miRNA:   3'- caCCGGGGGUagUG-CUUCC-GCCGCGa -5'
29145 5' -61.7 NC_006146.1 + 56802 0.67 0.58175
Target:  5'- -cGGCggCCGUCugGcGGGCGGgGCUu -3'
miRNA:   3'- caCCGggGGUAGugCuUCCGCCgCGA- -5'
29145 5' -61.7 NC_006146.1 + 27331 0.67 0.58175
Target:  5'- cUGGCCCuCCAaaaACaGcGGGUGGCGCg -3'
miRNA:   3'- cACCGGG-GGUag-UG-CuUCCGCCGCGa -5'
29145 5' -61.7 NC_006146.1 + 123286 0.67 0.58175
Target:  5'- cGUGG-CCCUAUCgGCGAucccuGGCGGcCGCc -3'
miRNA:   3'- -CACCgGGGGUAG-UGCUu----CCGCC-GCGa -5'
29145 5' -61.7 NC_006146.1 + 110816 0.67 0.58175
Target:  5'- -cGGCCCggcgauugcCCGUagcucCACGGgacgAGGCGGCGCc -3'
miRNA:   3'- caCCGGG---------GGUA-----GUGCU----UCCGCCGCGa -5'
29145 5' -61.7 NC_006146.1 + 139444 0.68 0.571998
Target:  5'- -aGGCCCCCAcggugCcCGggGG-GGUGCc -3'
miRNA:   3'- caCCGGGGGUa----GuGCuuCCgCCGCGa -5'
29145 5' -61.7 NC_006146.1 + 127844 0.68 0.571998
Target:  5'- cUGGCaCCCC-UCAacCGccAGGCGGCGUa -3'
miRNA:   3'- cACCG-GGGGuAGU--GCu-UCCGCCGCGa -5'
29145 5' -61.7 NC_006146.1 + 59575 0.68 0.568109
Target:  5'- -gGGCCacggcgcagguggCgAUCugGAGGGCGGCGUc -3'
miRNA:   3'- caCCGGg------------GgUAGugCUUCCGCCGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.