Results 1 - 20 of 115 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29145 | 5' | -61.7 | NC_006146.1 | + | 160441 | 1.06 | 0.00148 |
Target: 5'- gGUGGCCCCCAUCACGAAGGCGGCGCUc -3' miRNA: 3'- -CACCGGGGGUAGUGCUUCCGCCGCGA- -5' |
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29145 | 5' | -61.7 | NC_006146.1 | + | 128794 | 0.77 | 0.167038 |
Target: 5'- -aGGCCCUCGUagucgugcgccgucCGCGAAGGaCGGCGCg -3' miRNA: 3'- caCCGGGGGUA--------------GUGCUUCC-GCCGCGa -5' |
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29145 | 5' | -61.7 | NC_006146.1 | + | 56828 | 0.76 | 0.194569 |
Target: 5'- cUGGCCCCCGaggcggccUCuggcgGCGggGGCGGCaGCUu -3' miRNA: 3'- cACCGGGGGU--------AG-----UGCuuCCGCCG-CGA- -5' |
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29145 | 5' | -61.7 | NC_006146.1 | + | 11552 | 0.75 | 0.214047 |
Target: 5'- --cGCCCCCGcCAugcUGGAGGCGGCGCa -3' miRNA: 3'- cacCGGGGGUaGU---GCUUCCGCCGCGa -5' |
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29145 | 5' | -61.7 | NC_006146.1 | + | 53193 | 0.75 | 0.2244 |
Target: 5'- -cGGCCCCgGccUugGggGGCGGCGUg -3' miRNA: 3'- caCCGGGGgUa-GugCuuCCGCCGCGa -5' |
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29145 | 5' | -61.7 | NC_006146.1 | + | 46440 | 0.75 | 0.2244 |
Target: 5'- -gGGCCCCCAg---GAAGGCGGCGg- -3' miRNA: 3'- caCCGGGGGUagugCUUCCGCCGCga -5' |
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29145 | 5' | -61.7 | NC_006146.1 | + | 118051 | 0.74 | 0.252149 |
Target: 5'- -gGaGCCCCCGg-GCGggGGCGGCGg- -3' miRNA: 3'- caC-CGGGGGUagUGCuuCCGCCGCga -5' |
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29145 | 5' | -61.7 | NC_006146.1 | + | 170686 | 0.74 | 0.269503 |
Target: 5'- -gGGCgCCCCggggaccGUCGCGggGGCaccGGCGCg -3' miRNA: 3'- caCCG-GGGG-------UAGUGCuuCCG---CCGCGa -5' |
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29145 | 5' | -61.7 | NC_006146.1 | + | 32851 | 0.73 | 0.282662 |
Target: 5'- -cGGCCUCCcccccCAUGAagcGGGCGGCGCg -3' miRNA: 3'- caCCGGGGGua---GUGCU---UCCGCCGCGa -5' |
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29145 | 5' | -61.7 | NC_006146.1 | + | 136681 | 0.73 | 0.282662 |
Target: 5'- -cGGCCUCCcccccCAUGAagcGGGCGGCGCg -3' miRNA: 3'- caCCGGGGGua---GUGCU---UCCGCCGCGa -5' |
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29145 | 5' | -61.7 | NC_006146.1 | + | 170507 | 0.72 | 0.323046 |
Target: 5'- -cGGaCCCCCAgcgCGCGGcGGGCGGgGCc -3' miRNA: 3'- caCC-GGGGGUa--GUGCU-UCCGCCgCGa -5' |
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29145 | 5' | -61.7 | NC_006146.1 | + | 150480 | 0.72 | 0.330181 |
Target: 5'- aGUGGCCCCCugguagccGUCccuguCGGAGGCGGaggGCa -3' miRNA: 3'- -CACCGGGGG--------UAGu----GCUUCCGCCg--CGa -5' |
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29145 | 5' | -61.7 | NC_006146.1 | + | 139151 | 0.72 | 0.337432 |
Target: 5'- -gGGCUCCCGUCcccCGggGG-GGCGCc -3' miRNA: 3'- caCCGGGGGUAGu--GCuuCCgCCGCGa -5' |
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29145 | 5' | -61.7 | NC_006146.1 | + | 169758 | 0.72 | 0.344798 |
Target: 5'- -cGGCCCggggaCCcUCGCGggGGCaccGGCGCg -3' miRNA: 3'- caCCGGG-----GGuAGUGCuuCCG---CCGCGa -5' |
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29145 | 5' | -61.7 | NC_006146.1 | + | 167894 | 0.72 | 0.344798 |
Target: 5'- -cGGCCCggggaCCcUCGCGggGGCaccGGCGCg -3' miRNA: 3'- caCCGGG-----GGuAGUGCuuCCG---CCGCGa -5' |
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29145 | 5' | -61.7 | NC_006146.1 | + | 170639 | 0.72 | 0.344798 |
Target: 5'- -gGGCuCCCCcUCACG--GGUGGCGCg -3' miRNA: 3'- caCCG-GGGGuAGUGCuuCCGCCGCGa -5' |
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29145 | 5' | -61.7 | NC_006146.1 | + | 168826 | 0.72 | 0.344798 |
Target: 5'- -cGGCCCggggaCCcUCGCGggGGCaccGGCGCg -3' miRNA: 3'- caCCGGG-----GGuAGUGCuuCCG---CCGCGa -5' |
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29145 | 5' | -61.7 | NC_006146.1 | + | 101666 | 0.71 | 0.359873 |
Target: 5'- cUGGCCCUgGggggaaACGGgcuacGGGCGGCGCUa -3' miRNA: 3'- cACCGGGGgUag----UGCU-----UCCGCCGCGA- -5' |
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29145 | 5' | -61.7 | NC_006146.1 | + | 11633 | 0.71 | 0.383335 |
Target: 5'- -gGGCCCCgAggccCGCGu-GGCGGCGUUg -3' miRNA: 3'- caCCGGGGgUa---GUGCuuCCGCCGCGA- -5' |
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29145 | 5' | -61.7 | NC_006146.1 | + | 41207 | 0.71 | 0.391379 |
Target: 5'- -aGGCgCCCCAUC-CGcGGGCacugGGCGCg -3' miRNA: 3'- caCCG-GGGGUAGuGCuUCCG----CCGCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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