miRNA display CGI


Results 1 - 20 of 115 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29145 5' -61.7 NC_006146.1 + 568 0.67 0.6299
Target:  5'- cGUGGCCuCCCAggagaggggC-CGggGGCgcggcccGGCGCc -3'
miRNA:   3'- -CACCGG-GGGUa--------GuGCuuCCG-------CCGCGa -5'
29145 5' -61.7 NC_006146.1 + 941 0.69 0.48664
Target:  5'- -cGGCCuCCCGUCcCGAAGGCccuGGCa-- -3'
miRNA:   3'- caCCGG-GGGUAGuGCUUCCG---CCGcga -5'
29145 5' -61.7 NC_006146.1 + 1486 0.7 0.454178
Target:  5'- aGUGGCCUCCugacCAUGGcagccggccucguuuGGGUGGUGCUg -3'
miRNA:   3'- -CACCGGGGGua--GUGCU---------------UCCGCCGCGA- -5'
29145 5' -61.7 NC_006146.1 + 1499 0.67 0.6299
Target:  5'- cGUGGCCuCCCAggagaggggC-CGggGGCgcggcccGGCGCc -3'
miRNA:   3'- -CACCGG-GGGUa--------GuGCuuCCG-------CCGCGa -5'
29145 5' -61.7 NC_006146.1 + 1873 0.69 0.48664
Target:  5'- -cGGCCuCCCGUCcCGAAGGCccuGGCa-- -3'
miRNA:   3'- caCCGG-GGGUAGuGCUUCCG---CCGcga -5'
29145 5' -61.7 NC_006146.1 + 2431 0.67 0.6299
Target:  5'- cGUGGCCuCCCAggagaggggC-CGggGGCgcggcccGGCGCc -3'
miRNA:   3'- -CACCGG-GGGUa--------GuGCuuCCG-------CCGCGa -5'
29145 5' -61.7 NC_006146.1 + 2805 0.69 0.48664
Target:  5'- -cGGCCuCCCGUCcCGAAGGCccuGGCa-- -3'
miRNA:   3'- caCCGG-GGGUAGuGCUUCCG---CCGcga -5'
29145 5' -61.7 NC_006146.1 + 3363 0.67 0.6299
Target:  5'- cGUGGCCuCCCAggagaggggC-CGggGGCgcggcccGGCGCc -3'
miRNA:   3'- -CACCGG-GGGUa--------GuGCuuCCG-------CCGCGa -5'
29145 5' -61.7 NC_006146.1 + 3737 0.69 0.48664
Target:  5'- -cGGCCuCCCGUCcCGAAGGCccuGGCa-- -3'
miRNA:   3'- caCCGG-GGGUAGuGCUUCCG---CCGcga -5'
29145 5' -61.7 NC_006146.1 + 3800 0.66 0.68881
Target:  5'- uGUGGCCCaCagucagGUCugGGucaggccAGGCGGgGCa -3'
miRNA:   3'- -CACCGGG-Gg-----UAGugCU-------UCCGCCgCGa -5'
29145 5' -61.7 NC_006146.1 + 10994 0.66 0.689784
Target:  5'- gGUGcCCCCCAUCuuCGAGGGCcccGGC-CUc -3'
miRNA:   3'- -CACcGGGGGUAGu-GCUUCCG---CCGcGA- -5'
29145 5' -61.7 NC_006146.1 + 11399 0.69 0.47751
Target:  5'- uUGGCCCCUGggaCAuCGAAGGUGGaGCa -3'
miRNA:   3'- cACCGGGGGUa--GU-GCUUCCGCCgCGa -5'
29145 5' -61.7 NC_006146.1 + 11552 0.75 0.214047
Target:  5'- --cGCCCCCGcCAugcUGGAGGCGGCGCa -3'
miRNA:   3'- cacCGGGGGUaGU---GCUUCCGCCGCGa -5'
29145 5' -61.7 NC_006146.1 + 11633 0.71 0.383335
Target:  5'- -gGGCCCCgAggccCGCGu-GGCGGCGUUg -3'
miRNA:   3'- caCCGGGGgUa---GUGCuuCCGCCGCGA- -5'
29145 5' -61.7 NC_006146.1 + 13270 0.66 0.66043
Target:  5'- cUGGUgCCCAagACccAGGCGGUGCc -3'
miRNA:   3'- cACCGgGGGUagUGcuUCCGCCGCGa -5'
29145 5' -61.7 NC_006146.1 + 14187 0.66 0.680033
Target:  5'- cUGGaCCCCCGgagccuggaCGgGGAGGCgguGGCGCg -3'
miRNA:   3'- cACC-GGGGGUa--------GUgCUUCCG---CCGCGa -5'
29145 5' -61.7 NC_006146.1 + 14666 0.66 0.650593
Target:  5'- -cGGCaCCCCGUcCACGGccgAGGgGGCccGCg -3'
miRNA:   3'- caCCG-GGGGUA-GUGCU---UCCgCCG--CGa -5'
29145 5' -61.7 NC_006146.1 + 15109 0.68 0.55262
Target:  5'- gGUGGCCCCCAgggcCAcCGAGcggcucuucugcGGCGGgGUc -3'
miRNA:   3'- -CACCGGGGGUa---GU-GCUU------------CCGCCgCGa -5'
29145 5' -61.7 NC_006146.1 + 17423 0.66 0.689784
Target:  5'- -cGGCCauugugcgCCGUCgACGGAGGCaGGCGg- -3'
miRNA:   3'- caCCGGg-------GGUAG-UGCUUCCG-CCGCga -5'
29145 5' -61.7 NC_006146.1 + 18970 0.7 0.433201
Target:  5'- -cGGCCCCUAga--GAGGGCGGCa-- -3'
miRNA:   3'- caCCGGGGGUagugCUUCCGCCGcga -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.