miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29145 5' -61.7 NC_006146.1 + 170686 0.74 0.269503
Target:  5'- -gGGCgCCCCggggaccGUCGCGggGGCaccGGCGCg -3'
miRNA:   3'- caCCG-GGGG-------UAGUGCuuCCG---CCGCGa -5'
29145 5' -61.7 NC_006146.1 + 170639 0.72 0.344798
Target:  5'- -gGGCuCCCCcUCACG--GGUGGCGCg -3'
miRNA:   3'- caCCG-GGGGuAGUGCuuCCGCCGCGa -5'
29145 5' -61.7 NC_006146.1 + 170507 0.72 0.323046
Target:  5'- -cGGaCCCCCAgcgCGCGGcGGGCGGgGCc -3'
miRNA:   3'- caCC-GGGGGUa--GUGCU-UCCGCCgCGa -5'
29145 5' -61.7 NC_006146.1 + 169965 0.67 0.591535
Target:  5'- -gGGCCUUCGggACgGGAGGcCGGCGCg -3'
miRNA:   3'- caCCGGGGGUagUG-CUUCC-GCCGCGa -5'
29145 5' -61.7 NC_006146.1 + 169758 0.72 0.344798
Target:  5'- -cGGCCCggggaCCcUCGCGggGGCaccGGCGCg -3'
miRNA:   3'- caCCGGG-----GGuAGUGCuuCCG---CCGCGa -5'
29145 5' -61.7 NC_006146.1 + 169707 0.69 0.48664
Target:  5'- -gGGCuCCCCcUCACGGguGGGCgcucagaucGGCGCg -3'
miRNA:   3'- caCCG-GGGGuAGUGCU--UCCG---------CCGCGa -5'
29145 5' -61.7 NC_006146.1 + 169033 0.67 0.591535
Target:  5'- -gGGCCUUCGggACgGGAGGcCGGCGCg -3'
miRNA:   3'- caCCGGGGGUagUG-CUUCC-GCCGCGa -5'
29145 5' -61.7 NC_006146.1 + 168826 0.72 0.344798
Target:  5'- -cGGCCCggggaCCcUCGCGggGGCaccGGCGCg -3'
miRNA:   3'- caCCGGG-----GGuAGUGCuuCCG---CCGCGa -5'
29145 5' -61.7 NC_006146.1 + 168775 0.69 0.48664
Target:  5'- -gGGCuCCCCcUCACGGguGGGCgcucagaucGGCGCg -3'
miRNA:   3'- caCCG-GGGGuAGUGCU--UCCG---------CCGCGa -5'
29145 5' -61.7 NC_006146.1 + 168101 0.67 0.591535
Target:  5'- -gGGCCUUCGggACgGGAGGcCGGCGCg -3'
miRNA:   3'- caCCGGGGGUagUG-CUUCC-GCCGCGa -5'
29145 5' -61.7 NC_006146.1 + 167894 0.72 0.344798
Target:  5'- -cGGCCCggggaCCcUCGCGggGGCaccGGCGCg -3'
miRNA:   3'- caCCGGG-----GGuAGUGCuuCCG---CCGCGa -5'
29145 5' -61.7 NC_006146.1 + 167843 0.69 0.48664
Target:  5'- -gGGCuCCCCcUCACGGguGGGCgcucagaucGGCGCg -3'
miRNA:   3'- caCCG-GGGGuAGUGCU--UCCG---------CCGCGa -5'
29145 5' -61.7 NC_006146.1 + 167169 0.67 0.591535
Target:  5'- -gGGCCUUCGggACgGGAGGcCGGCGCg -3'
miRNA:   3'- caCCGGGGGUagUG-CUUCC-GCCGCGa -5'
29145 5' -61.7 NC_006146.1 + 166795 0.68 0.543003
Target:  5'- cUGGCCgCCGUCAucaaguccaUGAccGCGGUGCUg -3'
miRNA:   3'- cACCGGgGGUAGU---------GCUucCGCCGCGA- -5'
29145 5' -61.7 NC_006146.1 + 166001 0.66 0.650593
Target:  5'- -gGGUCCggcuCUGUCACc-AGGCGGCGCa -3'
miRNA:   3'- caCCGGG----GGUAGUGcuUCCGCCGCGa -5'
29145 5' -61.7 NC_006146.1 + 160441 1.06 0.00148
Target:  5'- gGUGGCCCCCAUCACGAAGGCGGCGCUc -3'
miRNA:   3'- -CACCGGGGGUAGUGCUUCCGCCGCGA- -5'
29145 5' -61.7 NC_006146.1 + 157330 0.66 0.693672
Target:  5'- -aGGCCCCUGUcCGCGAGGGagagucucuggccgGGCGg- -3'
miRNA:   3'- caCCGGGGGUA-GUGCUUCCg-------------CCGCga -5'
29145 5' -61.7 NC_006146.1 + 154252 0.66 0.693672
Target:  5'- -aGGCCCCUGUcCGCGAGGGagagucucuggccgGGCGg- -3'
miRNA:   3'- caCCGGGGGUA-GUGCUUCCg-------------CCGCga -5'
29145 5' -61.7 NC_006146.1 + 153324 0.66 0.670246
Target:  5'- -aGGUCgCCCAgcaUC-CGAuugaucuGGCGGCGCa -3'
miRNA:   3'- caCCGG-GGGU---AGuGCUu------CCGCCGCGa -5'
29145 5' -61.7 NC_006146.1 + 152038 0.66 0.658464
Target:  5'- -aGGCCCCCG-CACGuccaccaccccGGCaGCGCc -3'
miRNA:   3'- caCCGGGGGUaGUGCuu---------CCGcCGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.