miRNA display CGI


Results 41 - 60 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29145 5' -61.7 NC_006146.1 + 128528 0.69 0.48664
Target:  5'- -gGGCgCCCC-UCGCccacccuGGCGGCGCg -3'
miRNA:   3'- caCCG-GGGGuAGUGcuu----CCGCCGCGa -5'
29145 5' -61.7 NC_006146.1 + 170507 0.72 0.323046
Target:  5'- -cGGaCCCCCAgcgCGCGGcGGGCGGgGCc -3'
miRNA:   3'- caCC-GGGGGUa--GUGCU-UCCGCCgCGa -5'
29145 5' -61.7 NC_006146.1 + 169033 0.67 0.591535
Target:  5'- -gGGCCUUCGggACgGGAGGcCGGCGCg -3'
miRNA:   3'- caCCGGGGGUagUG-CUUCC-GCCGCGa -5'
29145 5' -61.7 NC_006146.1 + 170686 0.74 0.269503
Target:  5'- -gGGCgCCCCggggaccGUCGCGggGGCaccGGCGCg -3'
miRNA:   3'- caCCG-GGGG-------UAGUGCuuCCG---CCGCGa -5'
29145 5' -61.7 NC_006146.1 + 139151 0.72 0.337432
Target:  5'- -gGGCUCCCGUCcccCGggGG-GGCGCc -3'
miRNA:   3'- caCCGGGGGUAGu--GCuuCCgCCGCGa -5'
29145 5' -61.7 NC_006146.1 + 168826 0.72 0.344798
Target:  5'- -cGGCCCggggaCCcUCGCGggGGCaccGGCGCg -3'
miRNA:   3'- caCCGGG-----GGuAGUGCuuCCG---CCGCGa -5'
29145 5' -61.7 NC_006146.1 + 56240 0.67 0.630886
Target:  5'- -gGGUCCgCGgggGCGGAGGCGGgGCc -3'
miRNA:   3'- caCCGGGgGUag-UGCUUCCGCCgCGa -5'
29145 5' -61.7 NC_006146.1 + 127057 0.67 0.621029
Target:  5'- -aGGCCCUCga-GCu--GGCGGCGCg -3'
miRNA:   3'- caCCGGGGGuagUGcuuCCGCCGCGa -5'
29145 5' -61.7 NC_006146.1 + 71481 0.67 0.611181
Target:  5'- -gGGCCUgCCGUUugGccGGUGGUGCc -3'
miRNA:   3'- caCCGGG-GGUAGugCuuCCGCCGCGa -5'
29145 5' -61.7 NC_006146.1 + 119911 0.66 0.680033
Target:  5'- cGUGGCgCCCUcUUGCGGucAGuguuggcaGCGGCGCUg -3'
miRNA:   3'- -CACCG-GGGGuAGUGCU--UC--------CGCCGCGA- -5'
29145 5' -61.7 NC_006146.1 + 98667 0.67 0.591535
Target:  5'- cUGGUCCCCGugccuUCACGcgcaguGGGUGGgGCc -3'
miRNA:   3'- cACCGGGGGU-----AGUGCu-----UCCGCCgCGa -5'
29145 5' -61.7 NC_006146.1 + 55642 0.68 0.562286
Target:  5'- -gGGCCCCCGagGggugcagcagcCGGagccAGGCGGCGUUg -3'
miRNA:   3'- caCCGGGGGUagU-----------GCU----UCCGCCGCGA- -5'
29145 5' -61.7 NC_006146.1 + 38975 0.68 0.533443
Target:  5'- -gGGCCCCCAgacucUCGCaGAGGgGGCa-- -3'
miRNA:   3'- caCCGGGGGU-----AGUGcUUCCgCCGcga -5'
29145 5' -61.7 NC_006146.1 + 168775 0.69 0.48664
Target:  5'- -gGGCuCCCCcUCACGGguGGGCgcucagaucGGCGCg -3'
miRNA:   3'- caCCG-GGGGuAGUGCU--UCCG---------CCGCGa -5'
29145 5' -61.7 NC_006146.1 + 56561 0.69 0.47751
Target:  5'- -aGGCCCCCGUCcaccucCGucagGGGCGGCcggGCg -3'
miRNA:   3'- caCCGGGGGUAGu-----GCu---UCCGCCG---CGa -5'
29145 5' -61.7 NC_006146.1 + 65725 0.71 0.399531
Target:  5'- -cGGCCCCgGUCACu--GGaCGGUGCg -3'
miRNA:   3'- caCCGGGGgUAGUGcuuCC-GCCGCGa -5'
29145 5' -61.7 NC_006146.1 + 124159 0.66 0.693672
Target:  5'- aUGGCCCCaauguaguagaagagCugauUCGCaAGGGgGGCGCUg -3'
miRNA:   3'- cACCGGGG---------------Gu---AGUGcUUCCgCCGCGA- -5'
29145 5' -61.7 NC_006146.1 + 152038 0.66 0.658464
Target:  5'- -aGGCCCCCG-CACGuccaccaccccGGCaGCGCc -3'
miRNA:   3'- caCCGGGGGUaGUGCuu---------CCGcCGCGa -5'
29145 5' -61.7 NC_006146.1 + 27331 0.67 0.58175
Target:  5'- cUGGCCCuCCAaaaACaGcGGGUGGCGCg -3'
miRNA:   3'- cACCGGG-GGUag-UG-CuUCCGCCGCGa -5'
29145 5' -61.7 NC_006146.1 + 100759 0.66 0.66043
Target:  5'- -cGGCCaggagCCAg-GCGAAGGCGGCa-- -3'
miRNA:   3'- caCCGGg----GGUagUGCUUCCGCCGcga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.