miRNA display CGI


Results 41 - 60 of 98 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29146 5' -61.2 NC_006146.1 + 168821 0.67 0.599057
Target:  5'- cGGGGcGGCCcggggacccucgCGGGGGCacCGGCGCGUg -3'
miRNA:   3'- -UCCCuCCGGaa----------GUCCUCG--GCCGUGUA- -5'
29146 5' -61.2 NC_006146.1 + 48011 0.72 0.335636
Target:  5'- cGGGAGGCUUggCGGGGGa-GGCACGg -3'
miRNA:   3'- uCCCUCCGGAa-GUCCUCggCCGUGUa -5'
29146 5' -61.2 NC_006146.1 + 58552 0.67 0.613016
Target:  5'- cGuGGcGGCCUaCAuGGAGCCcuGGCACAg -3'
miRNA:   3'- uC-CCuCCGGAaGU-CCUCGG--CCGUGUa -5'
29146 5' -61.2 NC_006146.1 + 44388 0.73 0.30706
Target:  5'- cGGGGGGCg-UguGGGGCCgGGCACGg -3'
miRNA:   3'- uCCCUCCGgaAguCCUCGG-CCGUGUa -5'
29146 5' -61.2 NC_006146.1 + 154966 0.71 0.358311
Target:  5'- gAGGGAgacggucagcacGGCCUcgcgCAGGGcCCGGCACAg -3'
miRNA:   3'- -UCCCU------------CCGGAa---GUCCUcGGCCGUGUa -5'
29146 5' -61.2 NC_006146.1 + 54912 0.69 0.50545
Target:  5'- uGGccGGCCUUCAGGGaCCGGCAg-- -3'
miRNA:   3'- uCCcuCCGGAAGUCCUcGGCCGUgua -5'
29146 5' -61.2 NC_006146.1 + 52709 0.66 0.642992
Target:  5'- cGGGAGGUCaggGGGcGGCCGGC-CAg -3'
miRNA:   3'- uCCCUCCGGaagUCC-UCGGCCGuGUa -5'
29146 5' -61.2 NC_006146.1 + 17 0.66 0.632998
Target:  5'- aGGGGGGGUUg--AGGGGCCGGgAUg- -3'
miRNA:   3'- -UCCCUCCGGaagUCCUCGGCCgUGua -5'
29146 5' -61.2 NC_006146.1 + 156842 0.66 0.632998
Target:  5'- cGGGAGGaCCg-CAGccAGCCGGCGCu- -3'
miRNA:   3'- uCCCUCC-GGaaGUCc-UCGGCCGUGua -5'
29146 5' -61.2 NC_006146.1 + 40083 0.67 0.607029
Target:  5'- gGGGuGGGGUC-UCGuggguuuuuaauaccGGAGCCGGCGCc- -3'
miRNA:   3'- -UCC-CUCCGGaAGU---------------CCUCGGCCGUGua -5'
29146 5' -61.2 NC_006146.1 + 137960 0.67 0.603042
Target:  5'- gGGGGAggaucgcggccgGGCCUccCGGGGGCcCGGCGgGg -3'
miRNA:   3'- -UCCCU------------CCGGAa-GUCCUCG-GCCGUgUa -5'
29146 5' -61.2 NC_006146.1 + 170114 0.67 0.600053
Target:  5'- aGGGGGGGCCggCGGGGcgucccgucgucacGCuCGGCuGCAc -3'
miRNA:   3'- -UCCCUCCGGaaGUCCU--------------CG-GCCG-UGUa -5'
29146 5' -61.2 NC_006146.1 + 167319 0.67 0.600053
Target:  5'- aGGGGGGGCCggCGGGGcgucccgucgucacGCuCGGCuGCAc -3'
miRNA:   3'- -UCCCUCCGGaaGUCCU--------------CG-GCCG-UGUa -5'
29146 5' -61.2 NC_006146.1 + 170674 0.67 0.577222
Target:  5'- gGGGGAGGCCaggggcgCcccggggaccgucgcGGGGGCacCGGCGCGUa -3'
miRNA:   3'- -UCCCUCCGGaa-----G---------------UCCUCG--GCCGUGUA- -5'
29146 5' -61.2 NC_006146.1 + 170525 0.68 0.514948
Target:  5'- cGGGcGGGGCCUgaGGGGGCgCGGCGa-- -3'
miRNA:   3'- -UCC-CUCCGGAagUCCUCG-GCCGUgua -5'
29146 5' -61.2 NC_006146.1 + 48818 0.66 0.642992
Target:  5'- gGGGGcgguguccagaaAGGCCUUCAgcugcuccucGGAgGCgGGCGCGa -3'
miRNA:   3'- -UCCC------------UCCGGAAGU----------CCU-CGgCCGUGUa -5'
29146 5' -61.2 NC_006146.1 + 144610 0.66 0.632998
Target:  5'- uGGGAGGCUggUUCuGGGGCUGG-ACu- -3'
miRNA:   3'- uCCCUCCGG--AAGuCCUCGGCCgUGua -5'
29146 5' -61.2 NC_006146.1 + 141532 0.66 0.632998
Target:  5'- uGGGAGGCUggUUCuGGGGCUGG-ACu- -3'
miRNA:   3'- uCCCUCCGG--AAGuCCUCGGCCgUGua -5'
29146 5' -61.2 NC_006146.1 + 43601 0.67 0.570309
Target:  5'- cGGGAGGCCgggUCgggucgggggaagaGGGAGUgGGCgGCGg -3'
miRNA:   3'- uCCCUCCGGa--AG--------------UCCUCGgCCG-UGUa -5'
29146 5' -61.2 NC_006146.1 + 155317 0.66 0.662947
Target:  5'- gAGaGGAGGCCg--GGGAGC-GGCugGg -3'
miRNA:   3'- -UC-CCUCCGGaagUCCUCGgCCGugUa -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.