Results 41 - 60 of 98 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29146 | 5' | -61.2 | NC_006146.1 | + | 168821 | 0.67 | 0.599057 |
Target: 5'- cGGGGcGGCCcggggacccucgCGGGGGCacCGGCGCGUg -3' miRNA: 3'- -UCCCuCCGGaa----------GUCCUCG--GCCGUGUA- -5' |
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29146 | 5' | -61.2 | NC_006146.1 | + | 48011 | 0.72 | 0.335636 |
Target: 5'- cGGGAGGCUUggCGGGGGa-GGCACGg -3' miRNA: 3'- uCCCUCCGGAa-GUCCUCggCCGUGUa -5' |
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29146 | 5' | -61.2 | NC_006146.1 | + | 58552 | 0.67 | 0.613016 |
Target: 5'- cGuGGcGGCCUaCAuGGAGCCcuGGCACAg -3' miRNA: 3'- uC-CCuCCGGAaGU-CCUCGG--CCGUGUa -5' |
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29146 | 5' | -61.2 | NC_006146.1 | + | 44388 | 0.73 | 0.30706 |
Target: 5'- cGGGGGGCg-UguGGGGCCgGGCACGg -3' miRNA: 3'- uCCCUCCGgaAguCCUCGG-CCGUGUa -5' |
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29146 | 5' | -61.2 | NC_006146.1 | + | 154966 | 0.71 | 0.358311 |
Target: 5'- gAGGGAgacggucagcacGGCCUcgcgCAGGGcCCGGCACAg -3' miRNA: 3'- -UCCCU------------CCGGAa---GUCCUcGGCCGUGUa -5' |
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29146 | 5' | -61.2 | NC_006146.1 | + | 54912 | 0.69 | 0.50545 |
Target: 5'- uGGccGGCCUUCAGGGaCCGGCAg-- -3' miRNA: 3'- uCCcuCCGGAAGUCCUcGGCCGUgua -5' |
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29146 | 5' | -61.2 | NC_006146.1 | + | 52709 | 0.66 | 0.642992 |
Target: 5'- cGGGAGGUCaggGGGcGGCCGGC-CAg -3' miRNA: 3'- uCCCUCCGGaagUCC-UCGGCCGuGUa -5' |
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29146 | 5' | -61.2 | NC_006146.1 | + | 17 | 0.66 | 0.632998 |
Target: 5'- aGGGGGGGUUg--AGGGGCCGGgAUg- -3' miRNA: 3'- -UCCCUCCGGaagUCCUCGGCCgUGua -5' |
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29146 | 5' | -61.2 | NC_006146.1 | + | 156842 | 0.66 | 0.632998 |
Target: 5'- cGGGAGGaCCg-CAGccAGCCGGCGCu- -3' miRNA: 3'- uCCCUCC-GGaaGUCc-UCGGCCGUGua -5' |
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29146 | 5' | -61.2 | NC_006146.1 | + | 40083 | 0.67 | 0.607029 |
Target: 5'- gGGGuGGGGUC-UCGuggguuuuuaauaccGGAGCCGGCGCc- -3' miRNA: 3'- -UCC-CUCCGGaAGU---------------CCUCGGCCGUGua -5' |
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29146 | 5' | -61.2 | NC_006146.1 | + | 137960 | 0.67 | 0.603042 |
Target: 5'- gGGGGAggaucgcggccgGGCCUccCGGGGGCcCGGCGgGg -3' miRNA: 3'- -UCCCU------------CCGGAa-GUCCUCG-GCCGUgUa -5' |
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29146 | 5' | -61.2 | NC_006146.1 | + | 170114 | 0.67 | 0.600053 |
Target: 5'- aGGGGGGGCCggCGGGGcgucccgucgucacGCuCGGCuGCAc -3' miRNA: 3'- -UCCCUCCGGaaGUCCU--------------CG-GCCG-UGUa -5' |
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29146 | 5' | -61.2 | NC_006146.1 | + | 167319 | 0.67 | 0.600053 |
Target: 5'- aGGGGGGGCCggCGGGGcgucccgucgucacGCuCGGCuGCAc -3' miRNA: 3'- -UCCCUCCGGaaGUCCU--------------CG-GCCG-UGUa -5' |
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29146 | 5' | -61.2 | NC_006146.1 | + | 170674 | 0.67 | 0.577222 |
Target: 5'- gGGGGAGGCCaggggcgCcccggggaccgucgcGGGGGCacCGGCGCGUa -3' miRNA: 3'- -UCCCUCCGGaa-----G---------------UCCUCG--GCCGUGUA- -5' |
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29146 | 5' | -61.2 | NC_006146.1 | + | 170525 | 0.68 | 0.514948 |
Target: 5'- cGGGcGGGGCCUgaGGGGGCgCGGCGa-- -3' miRNA: 3'- -UCC-CUCCGGAagUCCUCG-GCCGUgua -5' |
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29146 | 5' | -61.2 | NC_006146.1 | + | 48818 | 0.66 | 0.642992 |
Target: 5'- gGGGGcgguguccagaaAGGCCUUCAgcugcuccucGGAgGCgGGCGCGa -3' miRNA: 3'- -UCCC------------UCCGGAAGU----------CCU-CGgCCGUGUa -5' |
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29146 | 5' | -61.2 | NC_006146.1 | + | 144610 | 0.66 | 0.632998 |
Target: 5'- uGGGAGGCUggUUCuGGGGCUGG-ACu- -3' miRNA: 3'- uCCCUCCGG--AAGuCCUCGGCCgUGua -5' |
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29146 | 5' | -61.2 | NC_006146.1 | + | 141532 | 0.66 | 0.632998 |
Target: 5'- uGGGAGGCUggUUCuGGGGCUGG-ACu- -3' miRNA: 3'- uCCCUCCGG--AAGuCCUCGGCCgUGua -5' |
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29146 | 5' | -61.2 | NC_006146.1 | + | 43601 | 0.67 | 0.570309 |
Target: 5'- cGGGAGGCCgggUCgggucgggggaagaGGGAGUgGGCgGCGg -3' miRNA: 3'- uCCCUCCGGa--AG--------------UCCUCGgCCG-UGUa -5' |
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29146 | 5' | -61.2 | NC_006146.1 | + | 155317 | 0.66 | 0.662947 |
Target: 5'- gAGaGGAGGCCg--GGGAGC-GGCugGg -3' miRNA: 3'- -UC-CCUCCGGaagUCCUCGgCCGugUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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