Results 21 - 40 of 98 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29146 | 5' | -61.2 | NC_006146.1 | + | 51595 | 0.72 | 0.350635 |
Target: 5'- gGGGGAcugaGGCCgguugcgUCGGGAcaGCCGGCugAg -3' miRNA: 3'- -UCCCU----CCGGa------AGUCCU--CGGCCGugUa -5' |
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29146 | 5' | -61.2 | NC_006146.1 | + | 138066 | 0.73 | 0.274009 |
Target: 5'- gGGGGAGGCCgccgcaAGGAcgccggGCCGGCugGg -3' miRNA: 3'- -UCCCUCCGGaag---UCCU------CGGCCGugUa -5' |
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29146 | 5' | -61.2 | NC_006146.1 | + | 167403 | 0.75 | 0.221786 |
Target: 5'- cGGGGccgGGGCCUggCGGGGGCCaGCGCGg -3' miRNA: 3'- -UCCC---UCCGGAa-GUCCUCGGcCGUGUa -5' |
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29146 | 5' | -61.2 | NC_006146.1 | + | 168087 | 0.76 | 0.173946 |
Target: 5'- uGGGcacugugccaGGGCCUUCGGGAcgggagGCCGGCGCGc -3' miRNA: 3'- uCCC----------UCCGGAAGUCCU------CGGCCGUGUa -5' |
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29146 | 5' | -61.2 | NC_006146.1 | + | 42293 | 0.67 | 0.593088 |
Target: 5'- cGGGGAGGaggagCGGGAGCCGGaguGCc- -3' miRNA: 3'- -UCCCUCCggaa-GUCCUCGGCCg--UGua -5' |
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29146 | 5' | -61.2 | NC_006146.1 | + | 68174 | 0.68 | 0.514948 |
Target: 5'- cGGGcAGGCgCagcgUCAGGAcGCgGGCGCAg -3' miRNA: 3'- uCCC-UCCG-Ga---AGUCCU-CGgCCGUGUa -5' |
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29146 | 5' | -61.2 | NC_006146.1 | + | 170424 | 0.75 | 0.227142 |
Target: 5'- gGGGGGGGUCccgCGGGGcCCGGCGCGUg -3' miRNA: 3'- -UCCCUCCGGaa-GUCCUcGGCCGUGUA- -5' |
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29146 | 5' | -61.2 | NC_006146.1 | + | 167155 | 0.76 | 0.173946 |
Target: 5'- uGGGcacugugccaGGGCCUUCGGGAcgggagGCCGGCGCGc -3' miRNA: 3'- uCCC----------UCCGGAAGUCCU------CGGCCGUGUa -5' |
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29146 | 5' | -61.2 | NC_006146.1 | + | 54912 | 0.69 | 0.50545 |
Target: 5'- uGGccGGCCUUCAGGGaCCGGCAg-- -3' miRNA: 3'- uCCcuCCGGAAGUCCUcGGCCGUgua -5' |
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29146 | 5' | -61.2 | NC_006146.1 | + | 52080 | 0.76 | 0.173946 |
Target: 5'- cGGGAGGgCUgcggUCGGGGGCCGGCGa-- -3' miRNA: 3'- uCCCUCCgGA----AGUCCUCGGCCGUgua -5' |
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29146 | 5' | -61.2 | NC_006146.1 | + | 34236 | 0.73 | 0.274009 |
Target: 5'- gGGGGAGGCCgccgcaAGGAcgccggGCCGGCugGg -3' miRNA: 3'- -UCCCUCCGGaag---UCCU------CGGCCGugUa -5' |
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29146 | 5' | -61.2 | NC_006146.1 | + | 154966 | 0.71 | 0.358311 |
Target: 5'- gAGGGAgacggucagcacGGCCUcgcgCAGGGcCCGGCACAg -3' miRNA: 3'- -UCCCU------------CCGGAa---GUCCUcGGCCGUGUa -5' |
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29146 | 5' | -61.2 | NC_006146.1 | + | 167629 | 0.75 | 0.227142 |
Target: 5'- gGGGGGGGUCccgCGGGGcCCGGCGCGUg -3' miRNA: 3'- -UCCCUCCGGaa-GUCCUcGGCCGUGUA- -5' |
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29146 | 5' | -61.2 | NC_006146.1 | + | 168335 | 0.75 | 0.221786 |
Target: 5'- cGGGGccgGGGCCUggCGGGGGCCaGCGCGg -3' miRNA: 3'- -UCCC---UCCGGAa-GUCCUCGGcCGUGUa -5' |
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29146 | 5' | -61.2 | NC_006146.1 | + | 168218 | 0.76 | 0.187243 |
Target: 5'- uGGGGAuGGCCggCGGGAgggGCCGGCGCc- -3' miRNA: 3'- -UCCCU-CCGGaaGUCCU---CGGCCGUGua -5' |
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29146 | 5' | -61.2 | NC_006146.1 | + | 169019 | 0.76 | 0.173946 |
Target: 5'- uGGGcacugugccaGGGCCUUCGGGAcgggagGCCGGCGCGc -3' miRNA: 3'- uCCC----------UCCGGAAGUCCU------CGGCCGUGUa -5' |
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29146 | 5' | -61.2 | NC_006146.1 | + | 167319 | 0.67 | 0.600053 |
Target: 5'- aGGGGGGGCCggCGGGGcgucccgucgucacGCuCGGCuGCAc -3' miRNA: 3'- -UCCCUCCGGaaGUCCU--------------CG-GCCG-UGUa -5' |
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29146 | 5' | -61.2 | NC_006146.1 | + | 167889 | 0.67 | 0.599057 |
Target: 5'- cGGGGcGGCCcggggacccucgCGGGGGCacCGGCGCGUg -3' miRNA: 3'- -UCCCuCCGGaa----------GUCCUCG--GCCGUGUA- -5' |
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29146 | 5' | -61.2 | NC_006146.1 | + | 118101 | 0.68 | 0.534155 |
Target: 5'- cAGGaAGGU---CAGGAGCUGGCGCAg -3' miRNA: 3'- -UCCcUCCGgaaGUCCUCGGCCGUGUa -5' |
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29146 | 5' | -61.2 | NC_006146.1 | + | 167729 | 0.68 | 0.514948 |
Target: 5'- cGGGuGGGGCCUgaGGGGGCgCGGCGa-- -3' miRNA: 3'- -UCC-CUCCGGAagUCCUCG-GCCGUgua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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