miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29146 5' -61.2 NC_006146.1 + 34236 0.73 0.274009
Target:  5'- gGGGGAGGCCgccgcaAGGAcgccggGCCGGCugGg -3'
miRNA:   3'- -UCCCUCCGGaag---UCCU------CGGCCGugUa -5'
29146 5' -61.2 NC_006146.1 + 44388 0.73 0.30706
Target:  5'- cGGGGGGCg-UguGGGGCCgGGCACGg -3'
miRNA:   3'- uCCCUCCGgaAguCCUCGG-CCGUGUa -5'
29146 5' -61.2 NC_006146.1 + 48011 0.72 0.335636
Target:  5'- cGGGAGGCUUggCGGGGGa-GGCACGg -3'
miRNA:   3'- uCCCUCCGGAa-GUCCUCggCCGUGUa -5'
29146 5' -61.2 NC_006146.1 + 74477 0.72 0.346085
Target:  5'- --cGAuGGCCUugagcggcgcuguguUCAGGAGCUGGCACAUc -3'
miRNA:   3'- uccCU-CCGGA---------------AGUCCUCGGCCGUGUA- -5'
29146 5' -61.2 NC_006146.1 + 51595 0.72 0.350635
Target:  5'- gGGGGAcugaGGCCgguugcgUCGGGAcaGCCGGCugAg -3'
miRNA:   3'- -UCCCU----CCGGa------AGUCCU--CGGCCGugUa -5'
29146 5' -61.2 NC_006146.1 + 154966 0.71 0.358311
Target:  5'- gAGGGAgacggucagcacGGCCUcgcgCAGGGcCCGGCACAg -3'
miRNA:   3'- -UCCCU------------CCGGAa---GUCCUcGGCCGUGUa -5'
29146 5' -61.2 NC_006146.1 + 47734 0.71 0.382038
Target:  5'- uGGGGAGGUCUUgGaGGGGCUGGCc--- -3'
miRNA:   3'- -UCCCUCCGGAAgU-CCUCGGCCGugua -5'
29146 5' -61.2 NC_006146.1 + 51973 0.71 0.382038
Target:  5'- cGGGGAGGUCUcCGGcaugcGGGCCgGGCGCGUu -3'
miRNA:   3'- -UCCCUCCGGAaGUC-----CUCGG-CCGUGUA- -5'
29146 5' -61.2 NC_006146.1 + 3810 0.7 0.436024
Target:  5'- gGGGGAuGGCCacgccccccucacuuUUUuGGAGCCGGCGgGUa -3'
miRNA:   3'- -UCCCU-CCGG---------------AAGuCCUCGGCCGUgUA- -5'
29146 5' -61.2 NC_006146.1 + 47180 0.7 0.450195
Target:  5'- aAGGGuGGCUgUCGGGAGCCcGaGCugGa -3'
miRNA:   3'- -UCCCuCCGGaAGUCCUCGG-C-CGugUa -5'
29146 5' -61.2 NC_006146.1 + 120277 0.69 0.459179
Target:  5'- uGGaGcaGGGUCUcaUCAGGAGCCGGuCACGc -3'
miRNA:   3'- uCC-C--UCCGGA--AGUCCUCGGCC-GUGUa -5'
29146 5' -61.2 NC_006146.1 + 123694 0.69 0.486686
Target:  5'- uGGcGGAGGCggcCAGGGGCCuGGCGCu- -3'
miRNA:   3'- -UC-CCUCCGgaaGUCCUCGG-CCGUGua -5'
29146 5' -61.2 NC_006146.1 + 117259 0.69 0.496028
Target:  5'- cAGGGGGGUCggCAGGuuccccaccaucAGUCGGUGCAc -3'
miRNA:   3'- -UCCCUCCGGaaGUCC------------UCGGCCGUGUa -5'
29146 5' -61.2 NC_006146.1 + 54912 0.69 0.50545
Target:  5'- uGGccGGCCUUCAGGGaCCGGCAg-- -3'
miRNA:   3'- uCCcuCCGGAAGUCCUcGGCCGUgua -5'
29146 5' -61.2 NC_006146.1 + 166359 0.69 0.50545
Target:  5'- gGGGGAGGUagUCGGcGGcuGCCGGCACc- -3'
miRNA:   3'- -UCCCUCCGgaAGUC-CU--CGGCCGUGua -5'
29146 5' -61.2 NC_006146.1 + 170525 0.68 0.514948
Target:  5'- cGGGcGGGGCCUgaGGGGGCgCGGCGa-- -3'
miRNA:   3'- -UCC-CUCCGGAagUCCUCG-GCCGUgua -5'
29146 5' -61.2 NC_006146.1 + 167729 0.68 0.514948
Target:  5'- cGGGuGGGGCCUgaGGGGGCgCGGCGa-- -3'
miRNA:   3'- -UCC-CUCCGGAagUCCUCG-GCCGUgua -5'
29146 5' -61.2 NC_006146.1 + 68174 0.68 0.514948
Target:  5'- cGGGcAGGCgCagcgUCAGGAcGCgGGCGCAg -3'
miRNA:   3'- uCCC-UCCG-Ga---AGUCCU-CGgCCGUGUa -5'
29146 5' -61.2 NC_006146.1 + 169594 0.68 0.514948
Target:  5'- cGGGuGGGGCCUgaGGGGGCgCGGCGa-- -3'
miRNA:   3'- -UCC-CUCCGGAagUCCUCG-GCCGUgua -5'
29146 5' -61.2 NC_006146.1 + 14856 0.68 0.515902
Target:  5'- cGGGAGGCCgagggggcagccaGGGAGCUGG-ACAa -3'
miRNA:   3'- uCCCUCCGGaag----------UCCUCGGCCgUGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.