miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29146 5' -61.2 NC_006146.1 + 155317 0.66 0.662947
Target:  5'- gAGaGGAGGCCg--GGGAGC-GGCugGg -3'
miRNA:   3'- -UC-CCUCCGGaagUCCUCGgCCGugUa -5'
29146 5' -61.2 NC_006146.1 + 152239 0.66 0.662947
Target:  5'- gAGaGGAGGCCg--GGGAGC-GGCugGg -3'
miRNA:   3'- -UC-CCUCCGGaagUCCUCGgCCGugUa -5'
29146 5' -61.2 NC_006146.1 + 149161 0.66 0.662947
Target:  5'- gAGaGGAGGCCg--GGGAGC-GGCugGg -3'
miRNA:   3'- -UC-CCUCCGGaagUCCUCGgCCGugUa -5'
29146 5' -61.2 NC_006146.1 + 100007 0.66 0.652977
Target:  5'- cGGGAgcgGGCacgUCGGGAGgCGGCGgGg -3'
miRNA:   3'- uCCCU---CCGga-AGUCCUCgGCCGUgUa -5'
29146 5' -61.2 NC_006146.1 + 93886 0.66 0.652977
Target:  5'- aAGGGGGGCggaaUUUgcggcaggGGGGGCCaGCACGg -3'
miRNA:   3'- -UCCCUCCGg---AAG--------UCCUCGGcCGUGUa -5'
29146 5' -61.2 NC_006146.1 + 52709 0.66 0.642992
Target:  5'- cGGGAGGUCaggGGGcGGCCGGC-CAg -3'
miRNA:   3'- uCCCUCCGGaagUCC-UCGGCCGuGUa -5'
29146 5' -61.2 NC_006146.1 + 48818 0.66 0.642992
Target:  5'- gGGGGcgguguccagaaAGGCCUUCAgcugcuccucGGAgGCgGGCGCGa -3'
miRNA:   3'- -UCCC------------UCCGGAAGU----------CCU-CGgCCGUGUa -5'
29146 5' -61.2 NC_006146.1 + 40025 0.66 0.642992
Target:  5'- cAGGG-GGCCUgcuGGGGGCCGuaGCc- -3'
miRNA:   3'- -UCCCuCCGGAag-UCCUCGGCcgUGua -5'
29146 5' -61.2 NC_006146.1 + 17 0.66 0.632998
Target:  5'- aGGGGGGGUUg--AGGGGCCGGgAUg- -3'
miRNA:   3'- -UCCCUCCGGaagUCCUCGGCCgUGua -5'
29146 5' -61.2 NC_006146.1 + 156842 0.66 0.632998
Target:  5'- cGGGAGGaCCg-CAGccAGCCGGCGCu- -3'
miRNA:   3'- uCCCUCC-GGaaGUCc-UCGGCCGUGua -5'
29146 5' -61.2 NC_006146.1 + 90065 0.66 0.632998
Target:  5'- gAGGGAG-CCU--AGGAGgCGGUGCAg -3'
miRNA:   3'- -UCCCUCcGGAagUCCUCgGCCGUGUa -5'
29146 5' -61.2 NC_006146.1 + 77923 0.66 0.632998
Target:  5'- cGGGcGGCCUcgCAGGuGCCGGgGg-- -3'
miRNA:   3'- uCCCuCCGGAa-GUCCuCGGCCgUgua -5'
29146 5' -61.2 NC_006146.1 + 141532 0.66 0.632998
Target:  5'- uGGGAGGCUggUUCuGGGGCUGG-ACu- -3'
miRNA:   3'- uCCCUCCGG--AAGuCCUCGGCCgUGua -5'
29146 5' -61.2 NC_006146.1 + 144610 0.66 0.632998
Target:  5'- uGGGAGGCUggUUCuGGGGCUGG-ACu- -3'
miRNA:   3'- uCCCUCCGG--AAGuCCUCGGCCgUGua -5'
29146 5' -61.2 NC_006146.1 + 150765 0.66 0.632998
Target:  5'- uGGGAGGCUggUUCuGGGGCUGG-ACu- -3'
miRNA:   3'- uCCCUCCGG--AAGuCCUCGGCCgUGua -5'
29146 5' -61.2 NC_006146.1 + 153843 0.66 0.632998
Target:  5'- uGGGAGGCUggUUCuGGGGCUGG-ACu- -3'
miRNA:   3'- uCCCUCCGG--AAGuCCUCGGCCgUGua -5'
29146 5' -61.2 NC_006146.1 + 156921 0.66 0.632998
Target:  5'- uGGGAGGCUggUUCuGGGGCUGG-ACu- -3'
miRNA:   3'- uCCCUCCGG--AAGuCCUCGGCCgUGua -5'
29146 5' -61.2 NC_006146.1 + 149976 0.67 0.623004
Target:  5'- gGGGGccaGGGCCUgCAGGucGGCCGGacuCAg -3'
miRNA:   3'- -UCCC---UCCGGAaGUCC--UCGGCCgu-GUa -5'
29146 5' -61.2 NC_006146.1 + 51894 0.67 0.623004
Target:  5'- gGGuGGAGGCUgcgucggCGGGGGCCuccgaGGCACc- -3'
miRNA:   3'- -UC-CCUCCGGaa-----GUCCUCGG-----CCGUGua -5'
29146 5' -61.2 NC_006146.1 + 58552 0.67 0.613016
Target:  5'- cGuGGcGGCCUaCAuGGAGCCcuGGCACAg -3'
miRNA:   3'- uC-CCuCCGGAaGU-CCUCGG--CCGUGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.