miRNA display CGI


Results 41 - 60 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29146 5' -61.2 NC_006146.1 + 40083 0.67 0.607029
Target:  5'- gGGGuGGGGUC-UCGuggguuuuuaauaccGGAGCCGGCGCc- -3'
miRNA:   3'- -UCC-CUCCGGaAGU---------------CCUCGGCCGUGua -5'
29146 5' -61.2 NC_006146.1 + 168662 0.67 0.603042
Target:  5'- cGGuGGGGCCUgaGGGGGCgCGGCGa-- -3'
miRNA:   3'- uCC-CUCCGGAagUCCUCG-GCCGUgua -5'
29146 5' -61.2 NC_006146.1 + 137960 0.67 0.603042
Target:  5'- gGGGGAggaucgcggccgGGCCUccCGGGGGCcCGGCGgGg -3'
miRNA:   3'- -UCCCU------------CCGGAa-GUCCUCG-GCCGUgUa -5'
29146 5' -61.2 NC_006146.1 + 42343 0.67 0.603042
Target:  5'- cGGGAGGUCagugUCu-GAGCCGGgACGUc -3'
miRNA:   3'- uCCCUCCGGa---AGucCUCGGCCgUGUA- -5'
29146 5' -61.2 NC_006146.1 + 169183 0.67 0.600053
Target:  5'- aGGGGGGGCCggCGGGGcgucccgucgucacGCuCGGCuGCAc -3'
miRNA:   3'- -UCCCUCCGGaaGUCCU--------------CG-GCCG-UGUa -5'
29146 5' -61.2 NC_006146.1 + 170114 0.67 0.600053
Target:  5'- aGGGGGGGCCggCGGGGcgucccgucgucacGCuCGGCuGCAc -3'
miRNA:   3'- -UCCCUCCGGaaGUCCU--------------CG-GCCG-UGUa -5'
29146 5' -61.2 NC_006146.1 + 167319 0.67 0.600053
Target:  5'- aGGGGGGGCCggCGGGGcgucccgucgucacGCuCGGCuGCAc -3'
miRNA:   3'- -UCCCUCCGGaaGUCCU--------------CG-GCCG-UGUa -5'
29146 5' -61.2 NC_006146.1 + 168251 0.67 0.600053
Target:  5'- aGGGGGGGCCggCGGGGcgucccgucgucacGCuCGGCuGCAc -3'
miRNA:   3'- -UCCCUCCGGaaGUCCU--------------CG-GCCG-UGUa -5'
29146 5' -61.2 NC_006146.1 + 169753 0.67 0.599057
Target:  5'- cGGGGcGGCCcggggacccucgCGGGGGCacCGGCGCGUg -3'
miRNA:   3'- -UCCCuCCGGaa----------GUCCUCG--GCCGUGUA- -5'
29146 5' -61.2 NC_006146.1 + 168821 0.67 0.599057
Target:  5'- cGGGGcGGCCcggggacccucgCGGGGGCacCGGCGCGUg -3'
miRNA:   3'- -UCCCuCCGGaa----------GUCCUCG--GCCGUGUA- -5'
29146 5' -61.2 NC_006146.1 + 167889 0.67 0.599057
Target:  5'- cGGGGcGGCCcggggacccucgCGGGGGCacCGGCGCGUg -3'
miRNA:   3'- -UCCCuCCGGaa----------GUCCUCG--GCCGUGUA- -5'
29146 5' -61.2 NC_006146.1 + 42293 0.67 0.593088
Target:  5'- cGGGGAGGaggagCGGGAGCCGGaguGCc- -3'
miRNA:   3'- -UCCCUCCggaa-GUCCUCGGCCg--UGua -5'
29146 5' -61.2 NC_006146.1 + 170674 0.67 0.577222
Target:  5'- gGGGGAGGCCaggggcgCcccggggaccgucgcGGGGGCacCGGCGCGUa -3'
miRNA:   3'- -UCCCUCCGGaa-----G---------------UCCUCG--GCCGUGUA- -5'
29146 5' -61.2 NC_006146.1 + 43601 0.67 0.570309
Target:  5'- cGGGAGGCCgggUCgggucgggggaagaGGGAGUgGGCgGCGg -3'
miRNA:   3'- uCCCUCCGGa--AG--------------UCCUCGgCCG-UGUa -5'
29146 5' -61.2 NC_006146.1 + 147688 0.68 0.566368
Target:  5'- uGGGAGGCugguucugggcuggaCUugggacagugagcUCAGGAGCCGGgGCc- -3'
miRNA:   3'- uCCCUCCG---------------GA-------------AGUCCUCGGCCgUGua -5'
29146 5' -61.2 NC_006146.1 + 102461 0.68 0.563417
Target:  5'- ---uAGGCUUUcCAGGAGCCGGcCGCGg -3'
miRNA:   3'- ucccUCCGGAA-GUCCUCGGCC-GUGUa -5'
29146 5' -61.2 NC_006146.1 + 118101 0.68 0.534155
Target:  5'- cAGGaAGGU---CAGGAGCUGGCGCAg -3'
miRNA:   3'- -UCCcUCCGgaaGUCCUCGGCCGUGUa -5'
29146 5' -61.2 NC_006146.1 + 41079 0.68 0.528365
Target:  5'- gAGGGAGGCCagggacagcgagGGGAGCCaGGCguGCAg -3'
miRNA:   3'- -UCCCUCCGGaag---------UCCUCGG-CCG--UGUa -5'
29146 5' -61.2 NC_006146.1 + 14856 0.68 0.515902
Target:  5'- cGGGAGGCCgagggggcagccaGGGAGCUGG-ACAa -3'
miRNA:   3'- uCCCUCCGGaag----------UCCUCGGCCgUGUa -5'
29146 5' -61.2 NC_006146.1 + 68174 0.68 0.514948
Target:  5'- cGGGcAGGCgCagcgUCAGGAcGCgGGCGCAg -3'
miRNA:   3'- uCCC-UCCG-Ga---AGUCCU-CGgCCGUGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.