miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29146 5' -61.2 NC_006146.1 + 48818 0.66 0.642992
Target:  5'- gGGGGcgguguccagaaAGGCCUUCAgcugcuccucGGAgGCgGGCGCGa -3'
miRNA:   3'- -UCCC------------UCCGGAAGU----------CCU-CGgCCGUGUa -5'
29146 5' -61.2 NC_006146.1 + 51595 0.72 0.350635
Target:  5'- gGGGGAcugaGGCCgguugcgUCGGGAcaGCCGGCugAg -3'
miRNA:   3'- -UCCCU----CCGGa------AGUCCU--CGGCCGugUa -5'
29146 5' -61.2 NC_006146.1 + 51894 0.67 0.623004
Target:  5'- gGGuGGAGGCUgcgucggCGGGGGCCuccgaGGCACc- -3'
miRNA:   3'- -UC-CCUCCGGaa-----GUCCUCGG-----CCGUGua -5'
29146 5' -61.2 NC_006146.1 + 51973 0.71 0.382038
Target:  5'- cGGGGAGGUCUcCGGcaugcGGGCCgGGCGCGUu -3'
miRNA:   3'- -UCCCUCCGGAaGUC-----CUCGG-CCGUGUA- -5'
29146 5' -61.2 NC_006146.1 + 52080 0.76 0.173946
Target:  5'- cGGGAGGgCUgcggUCGGGGGCCGGCGa-- -3'
miRNA:   3'- uCCCUCCgGA----AGUCCUCGGCCGUgua -5'
29146 5' -61.2 NC_006146.1 + 52709 0.66 0.642992
Target:  5'- cGGGAGGUCaggGGGcGGCCGGC-CAg -3'
miRNA:   3'- uCCCUCCGGaagUCC-UCGGCCGuGUa -5'
29146 5' -61.2 NC_006146.1 + 54912 0.69 0.50545
Target:  5'- uGGccGGCCUUCAGGGaCCGGCAg-- -3'
miRNA:   3'- uCCcuCCGGAAGUCCUcGGCCGUgua -5'
29146 5' -61.2 NC_006146.1 + 58552 0.67 0.613016
Target:  5'- cGuGGcGGCCUaCAuGGAGCCcuGGCACAg -3'
miRNA:   3'- uC-CCuCCGGAaGU-CCUCGG--CCGUGUa -5'
29146 5' -61.2 NC_006146.1 + 66542 0.66 0.686762
Target:  5'- cAGGGGGGCCccgaugucuuugaucUUguGGcgcAGgCGGCGCAg -3'
miRNA:   3'- -UCCCUCCGG---------------AAguCC---UCgGCCGUGUa -5'
29146 5' -61.2 NC_006146.1 + 68174 0.68 0.514948
Target:  5'- cGGGcAGGCgCagcgUCAGGAcGCgGGCGCAg -3'
miRNA:   3'- uCCC-UCCG-Ga---AGUCCU-CGgCCGUGUa -5'
29146 5' -61.2 NC_006146.1 + 74477 0.72 0.346085
Target:  5'- --cGAuGGCCUugagcggcgcuguguUCAGGAGCUGGCACAUc -3'
miRNA:   3'- uccCU-CCGGA---------------AGUCCUCGGCCGUGUA- -5'
29146 5' -61.2 NC_006146.1 + 75271 0.66 0.672893
Target:  5'- cGGGGAuGGCCg--AGGAGCCGaGaGCGUc -3'
miRNA:   3'- -UCCCU-CCGGaagUCCUCGGC-CgUGUA- -5'
29146 5' -61.2 NC_006146.1 + 75487 0.66 0.662947
Target:  5'- cGGGGAcGGC----GGGGGCCGGCAa-- -3'
miRNA:   3'- -UCCCU-CCGgaagUCCUCGGCCGUgua -5'
29146 5' -61.2 NC_006146.1 + 77290 0.66 0.662947
Target:  5'- cGGGGAGGaCagcagcccCAGGAGCCcGGCGgGUc -3'
miRNA:   3'- -UCCCUCC-Ggaa-----GUCCUCGG-CCGUgUA- -5'
29146 5' -61.2 NC_006146.1 + 77923 0.66 0.632998
Target:  5'- cGGGcGGCCUcgCAGGuGCCGGgGg-- -3'
miRNA:   3'- uCCCuCCGGAa-GUCCuCGGCCgUgua -5'
29146 5' -61.2 NC_006146.1 + 90065 0.66 0.632998
Target:  5'- gAGGGAG-CCU--AGGAGgCGGUGCAg -3'
miRNA:   3'- -UCCCUCcGGAagUCCUCgGCCGUGUa -5'
29146 5' -61.2 NC_006146.1 + 93886 0.66 0.652977
Target:  5'- aAGGGGGGCggaaUUUgcggcaggGGGGGCCaGCACGg -3'
miRNA:   3'- -UCCCUCCGg---AAG--------UCCUCGGcCGUGUa -5'
29146 5' -61.2 NC_006146.1 + 100007 0.66 0.652977
Target:  5'- cGGGAgcgGGCacgUCGGGAGgCGGCGgGg -3'
miRNA:   3'- uCCCU---CCGga-AGUCCUCgGCCGUgUa -5'
29146 5' -61.2 NC_006146.1 + 102461 0.68 0.563417
Target:  5'- ---uAGGCUUUcCAGGAGCCGGcCGCGg -3'
miRNA:   3'- ucccUCCGGAA-GUCCUCGGCC-GUGUa -5'
29146 5' -61.2 NC_006146.1 + 117259 0.69 0.496028
Target:  5'- cAGGGGGGUCggCAGGuuccccaccaucAGUCGGUGCAc -3'
miRNA:   3'- -UCCCUCCGGaaGUCC------------UCGGCCGUGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.