miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29146 5' -61.2 NC_006146.1 + 17 0.66 0.632998
Target:  5'- aGGGGGGGUUg--AGGGGCCGGgAUg- -3'
miRNA:   3'- -UCCCUCCGGaagUCCUCGGCCgUGua -5'
29146 5' -61.2 NC_006146.1 + 3810 0.7 0.436024
Target:  5'- gGGGGAuGGCCacgccccccucacuuUUUuGGAGCCGGCGgGUa -3'
miRNA:   3'- -UCCCU-CCGG---------------AAGuCCUCGGCCGUgUA- -5'
29146 5' -61.2 NC_006146.1 + 10670 0.66 0.682807
Target:  5'- cGGGGAGGCC--CGGGGcgauacccGCgGGCAuCAUg -3'
miRNA:   3'- -UCCCUCCGGaaGUCCU--------CGgCCGU-GUA- -5'
29146 5' -61.2 NC_006146.1 + 14034 0.66 0.682807
Target:  5'- cAGGGA-GCaggCGGGGGCaGGCGCAa -3'
miRNA:   3'- -UCCCUcCGgaaGUCCUCGgCCGUGUa -5'
29146 5' -61.2 NC_006146.1 + 14856 0.68 0.515902
Target:  5'- cGGGAGGCCgagggggcagccaGGGAGCUGG-ACAa -3'
miRNA:   3'- uCCCUCCGGaag----------UCCUCGGCCgUGUa -5'
29146 5' -61.2 NC_006146.1 + 24200 0.66 0.671899
Target:  5'- gAGGGcuGGGCCUgcgagguUCuguuGGGGCCGGgGCc- -3'
miRNA:   3'- -UCCC--UCCGGA-------AGu---CCUCGGCCgUGua -5'
29146 5' -61.2 NC_006146.1 + 33208 0.76 0.191871
Target:  5'- gGGGGAGGCCggaggGGGAGCCGGgAUg- -3'
miRNA:   3'- -UCCCUCCGGaag--UCCUCGGCCgUGua -5'
29146 5' -61.2 NC_006146.1 + 34236 0.73 0.274009
Target:  5'- gGGGGAGGCCgccgcaAGGAcgccggGCCGGCugGg -3'
miRNA:   3'- -UCCCUCCGGaag---UCCU------CGGCCGugUa -5'
29146 5' -61.2 NC_006146.1 + 40025 0.66 0.642992
Target:  5'- cAGGG-GGCCUgcuGGGGGCCGuaGCc- -3'
miRNA:   3'- -UCCCuCCGGAag-UCCUCGGCcgUGua -5'
29146 5' -61.2 NC_006146.1 + 40083 0.67 0.607029
Target:  5'- gGGGuGGGGUC-UCGuggguuuuuaauaccGGAGCCGGCGCc- -3'
miRNA:   3'- -UCC-CUCCGGaAGU---------------CCUCGGCCGUGua -5'
29146 5' -61.2 NC_006146.1 + 41079 0.68 0.528365
Target:  5'- gAGGGAGGCCagggacagcgagGGGAGCCaGGCguGCAg -3'
miRNA:   3'- -UCCCUCCGGaag---------UCCUCGG-CCG--UGUa -5'
29146 5' -61.2 NC_006146.1 + 42293 0.67 0.593088
Target:  5'- cGGGGAGGaggagCGGGAGCCGGaguGCc- -3'
miRNA:   3'- -UCCCUCCggaa-GUCCUCGGCCg--UGua -5'
29146 5' -61.2 NC_006146.1 + 42343 0.67 0.603042
Target:  5'- cGGGAGGUCagugUCu-GAGCCGGgACGUc -3'
miRNA:   3'- uCCCUCCGGa---AGucCUCGGCCgUGUA- -5'
29146 5' -61.2 NC_006146.1 + 43275 0.66 0.682807
Target:  5'- cAGGGcGGCCUggAGGu-CCGGCAgGUg -3'
miRNA:   3'- -UCCCuCCGGAagUCCucGGCCGUgUA- -5'
29146 5' -61.2 NC_006146.1 + 43601 0.67 0.570309
Target:  5'- cGGGAGGCCgggUCgggucgggggaagaGGGAGUgGGCgGCGg -3'
miRNA:   3'- uCCCUCCGGa--AG--------------UCCUCGgCCG-UGUa -5'
29146 5' -61.2 NC_006146.1 + 44388 0.73 0.30706
Target:  5'- cGGGGGGCg-UguGGGGCCgGGCACGg -3'
miRNA:   3'- uCCCUCCGgaAguCCUCGG-CCGUGUa -5'
29146 5' -61.2 NC_006146.1 + 44794 0.66 0.667923
Target:  5'- cAGGGGGGCgcagcgucuaauaCUgggaccucuguaGGGGGCCGGCGCc- -3'
miRNA:   3'- -UCCCUCCG-------------GAag----------UCCUCGGCCGUGua -5'
29146 5' -61.2 NC_006146.1 + 47180 0.7 0.450195
Target:  5'- aAGGGuGGCUgUCGGGAGCCcGaGCugGa -3'
miRNA:   3'- -UCCCuCCGGaAGUCCUCGG-C-CGugUa -5'
29146 5' -61.2 NC_006146.1 + 47734 0.71 0.382038
Target:  5'- uGGGGAGGUCUUgGaGGGGCUGGCc--- -3'
miRNA:   3'- -UCCCUCCGGAAgU-CCUCGGCCGugua -5'
29146 5' -61.2 NC_006146.1 + 48011 0.72 0.335636
Target:  5'- cGGGAGGCUUggCGGGGGa-GGCACGg -3'
miRNA:   3'- uCCCUCCGGAa-GUCCUCggCCGUGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.