miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29146 5' -61.2 NC_006146.1 + 170674 0.67 0.577222
Target:  5'- gGGGGAGGCCaggggcgCcccggggaccgucgcGGGGGCacCGGCGCGUa -3'
miRNA:   3'- -UCCCUCCGGaa-----G---------------UCCUCG--GCCGUGUA- -5'
29146 5' -61.2 NC_006146.1 + 170525 0.68 0.514948
Target:  5'- cGGGcGGGGCCUgaGGGGGCgCGGCGa-- -3'
miRNA:   3'- -UCC-CUCCGGAagUCCUCG-GCCGUgua -5'
29146 5' -61.2 NC_006146.1 + 170424 0.75 0.227142
Target:  5'- gGGGGGGGUCccgCGGGGcCCGGCGCGUg -3'
miRNA:   3'- -UCCCUCCGGaa-GUCCUcGGCCGUGUA- -5'
29146 5' -61.2 NC_006146.1 + 170198 0.75 0.221786
Target:  5'- cGGGGccgGGGCCUggCGGGGGCCaGCGCGg -3'
miRNA:   3'- -UCCC---UCCGGAa-GUCCUCGGcCGUGUa -5'
29146 5' -61.2 NC_006146.1 + 170114 0.67 0.600053
Target:  5'- aGGGGGGGCCggCGGGGcgucccgucgucacGCuCGGCuGCAc -3'
miRNA:   3'- -UCCCUCCGGaaGUCCU--------------CG-GCCG-UGUa -5'
29146 5' -61.2 NC_006146.1 + 170082 0.76 0.187243
Target:  5'- uGGGGAuGGCCggCGGGAgggGCCGGCGCc- -3'
miRNA:   3'- -UCCCU-CCGGaaGUCCU---CGGCCGUGua -5'
29146 5' -61.2 NC_006146.1 + 169951 0.76 0.173946
Target:  5'- uGGGcacugugccaGGGCCUUCGGGAcgggagGCCGGCGCGc -3'
miRNA:   3'- uCCC----------UCCGGAAGUCCU------CGGCCGUGUa -5'
29146 5' -61.2 NC_006146.1 + 169753 0.67 0.599057
Target:  5'- cGGGGcGGCCcggggacccucgCGGGGGCacCGGCGCGUg -3'
miRNA:   3'- -UCCCuCCGGaa----------GUCCUCG--GCCGUGUA- -5'
29146 5' -61.2 NC_006146.1 + 169594 0.68 0.514948
Target:  5'- cGGGuGGGGCCUgaGGGGGCgCGGCGa-- -3'
miRNA:   3'- -UCC-CUCCGGAagUCCUCG-GCCGUgua -5'
29146 5' -61.2 NC_006146.1 + 169493 0.75 0.227142
Target:  5'- gGGGGGGGUCccgCGGGGcCCGGCGCGUg -3'
miRNA:   3'- -UCCCUCCGGaa-GUCCUcGGCCGUGUA- -5'
29146 5' -61.2 NC_006146.1 + 169267 0.75 0.221786
Target:  5'- cGGGGccgGGGCCUggCGGGGGCCaGCGCGg -3'
miRNA:   3'- -UCCC---UCCGGAa-GUCCUCGGcCGUGUa -5'
29146 5' -61.2 NC_006146.1 + 169183 0.67 0.600053
Target:  5'- aGGGGGGGCCggCGGGGcgucccgucgucacGCuCGGCuGCAc -3'
miRNA:   3'- -UCCCUCCGGaaGUCCU--------------CG-GCCG-UGUa -5'
29146 5' -61.2 NC_006146.1 + 169150 0.76 0.187243
Target:  5'- uGGGGAuGGCCggCGGGAgggGCCGGCGCc- -3'
miRNA:   3'- -UCCCU-CCGGaaGUCCU---CGGCCGUGua -5'
29146 5' -61.2 NC_006146.1 + 169019 0.76 0.173946
Target:  5'- uGGGcacugugccaGGGCCUUCGGGAcgggagGCCGGCGCGc -3'
miRNA:   3'- uCCC----------UCCGGAAGUCCU------CGGCCGUGUa -5'
29146 5' -61.2 NC_006146.1 + 168821 0.67 0.599057
Target:  5'- cGGGGcGGCCcggggacccucgCGGGGGCacCGGCGCGUg -3'
miRNA:   3'- -UCCCuCCGGaa----------GUCCUCG--GCCGUGUA- -5'
29146 5' -61.2 NC_006146.1 + 168662 0.67 0.603042
Target:  5'- cGGuGGGGCCUgaGGGGGCgCGGCGa-- -3'
miRNA:   3'- uCC-CUCCGGAagUCCUCG-GCCGUgua -5'
29146 5' -61.2 NC_006146.1 + 168561 0.75 0.227142
Target:  5'- gGGGGGGGUCccgCGGGGcCCGGCGCGUg -3'
miRNA:   3'- -UCCCUCCGGaa-GUCCUcGGCCGUGUA- -5'
29146 5' -61.2 NC_006146.1 + 168335 0.75 0.221786
Target:  5'- cGGGGccgGGGCCUggCGGGGGCCaGCGCGg -3'
miRNA:   3'- -UCCC---UCCGGAa-GUCCUCGGcCGUGUa -5'
29146 5' -61.2 NC_006146.1 + 168251 0.67 0.600053
Target:  5'- aGGGGGGGCCggCGGGGcgucccgucgucacGCuCGGCuGCAc -3'
miRNA:   3'- -UCCCUCCGGaaGUCCU--------------CG-GCCG-UGUa -5'
29146 5' -61.2 NC_006146.1 + 168218 0.76 0.187243
Target:  5'- uGGGGAuGGCCggCGGGAgggGCCGGCGCc- -3'
miRNA:   3'- -UCCCU-CCGGaaGUCCU---CGGCCGUGua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.