Results 1 - 20 of 98 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29146 | 5' | -61.2 | NC_006146.1 | + | 160663 | 0.97 | 0.005883 |
Target: 5'- cAGGGAGGCCUUCAGG-GCCGGCACAUg -3' miRNA: 3'- -UCCCUCCGGAAGUCCuCGGCCGUGUA- -5' |
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29146 | 5' | -61.2 | NC_006146.1 | + | 170424 | 0.75 | 0.227142 |
Target: 5'- gGGGGGGGUCccgCGGGGcCCGGCGCGUg -3' miRNA: 3'- -UCCCUCCGGaa-GUCCUcGGCCGUGUA- -5' |
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29146 | 5' | -61.2 | NC_006146.1 | + | 138066 | 0.73 | 0.274009 |
Target: 5'- gGGGGAGGCCgccgcaAGGAcgccggGCCGGCugGg -3' miRNA: 3'- -UCCCUCCGGaag---UCCU------CGGCCGugUa -5' |
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29146 | 5' | -61.2 | NC_006146.1 | + | 66542 | 0.66 | 0.686762 |
Target: 5'- cAGGGGGGCCccgaugucuuugaucUUguGGcgcAGgCGGCGCAg -3' miRNA: 3'- -UCCCUCCGG---------------AAguCC---UCgGCCGUGUa -5' |
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29146 | 5' | -61.2 | NC_006146.1 | + | 169019 | 0.76 | 0.173946 |
Target: 5'- uGGGcacugugccaGGGCCUUCGGGAcgggagGCCGGCGCGc -3' miRNA: 3'- uCCC----------UCCGGAAGUCCU------CGGCCGUGUa -5' |
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29146 | 5' | -61.2 | NC_006146.1 | + | 169951 | 0.76 | 0.173946 |
Target: 5'- uGGGcacugugccaGGGCCUUCGGGAcgggagGCCGGCGCGc -3' miRNA: 3'- uCCC----------UCCGGAAGUCCU------CGGCCGUGUa -5' |
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29146 | 5' | -61.2 | NC_006146.1 | + | 168218 | 0.76 | 0.187243 |
Target: 5'- uGGGGAuGGCCggCGGGAgggGCCGGCGCc- -3' miRNA: 3'- -UCCCU-CCGGaaGUCCU---CGGCCGUGua -5' |
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29146 | 5' | -61.2 | NC_006146.1 | + | 169150 | 0.76 | 0.187243 |
Target: 5'- uGGGGAuGGCCggCGGGAgggGCCGGCGCc- -3' miRNA: 3'- -UCCCU-CCGGaaGUCCU---CGGCCGUGua -5' |
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29146 | 5' | -61.2 | NC_006146.1 | + | 168335 | 0.75 | 0.221786 |
Target: 5'- cGGGGccgGGGCCUggCGGGGGCCaGCGCGg -3' miRNA: 3'- -UCCC---UCCGGAa-GUCCUCGGcCGUGUa -5' |
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29146 | 5' | -61.2 | NC_006146.1 | + | 169493 | 0.75 | 0.227142 |
Target: 5'- gGGGGGGGUCccgCGGGGcCCGGCGCGUg -3' miRNA: 3'- -UCCCUCCGGaa-GUCCUcGGCCGUGUA- -5' |
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29146 | 5' | -61.2 | NC_006146.1 | + | 170198 | 0.75 | 0.221786 |
Target: 5'- cGGGGccgGGGCCUggCGGGGGCCaGCGCGg -3' miRNA: 3'- -UCCC---UCCGGAa-GUCCUCGGcCGUGUa -5' |
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29146 | 5' | -61.2 | NC_006146.1 | + | 167403 | 0.75 | 0.221786 |
Target: 5'- cGGGGccgGGGCCUggCGGGGGCCaGCGCGg -3' miRNA: 3'- -UCCC---UCCGGAa-GUCCUCGGcCGUGUa -5' |
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29146 | 5' | -61.2 | NC_006146.1 | + | 52080 | 0.76 | 0.173946 |
Target: 5'- cGGGAGGgCUgcggUCGGGGGCCGGCGa-- -3' miRNA: 3'- uCCCUCCgGA----AGUCCUCGGCCGUgua -5' |
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29146 | 5' | -61.2 | NC_006146.1 | + | 167629 | 0.75 | 0.227142 |
Target: 5'- gGGGGGGGUCccgCGGGGcCCGGCGCGUg -3' miRNA: 3'- -UCCCUCCGGaa-GUCCUcGGCCGUGUA- -5' |
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29146 | 5' | -61.2 | NC_006146.1 | + | 167155 | 0.76 | 0.173946 |
Target: 5'- uGGGcacugugccaGGGCCUUCGGGAcgggagGCCGGCGCGc -3' miRNA: 3'- uCCC----------UCCGGAAGUCCU------CGGCCGUGUa -5' |
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29146 | 5' | -61.2 | NC_006146.1 | + | 170082 | 0.76 | 0.187243 |
Target: 5'- uGGGGAuGGCCggCGGGAgggGCCGGCGCc- -3' miRNA: 3'- -UCCCU-CCGGaaGUCCU---CGGCCGUGua -5' |
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29146 | 5' | -61.2 | NC_006146.1 | + | 168561 | 0.75 | 0.227142 |
Target: 5'- gGGGGGGGUCccgCGGGGcCCGGCGCGUg -3' miRNA: 3'- -UCCCUCCGGaa-GUCCUcGGCCGUGUA- -5' |
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29146 | 5' | -61.2 | NC_006146.1 | + | 34236 | 0.73 | 0.274009 |
Target: 5'- gGGGGAGGCCgccgcaAGGAcgccggGCCGGCugGg -3' miRNA: 3'- -UCCCUCCGGaag---UCCU------CGGCCGugUa -5' |
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29146 | 5' | -61.2 | NC_006146.1 | + | 168087 | 0.76 | 0.173946 |
Target: 5'- uGGGcacugugccaGGGCCUUCGGGAcgggagGCCGGCGCGc -3' miRNA: 3'- uCCC----------UCCGGAAGUCCU------CGGCCGUGUa -5' |
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29146 | 5' | -61.2 | NC_006146.1 | + | 167286 | 0.76 | 0.187243 |
Target: 5'- uGGGGAuGGCCggCGGGAgggGCCGGCGCc- -3' miRNA: 3'- -UCCCU-CCGGaaGUCCU---CGGCCGUGua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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