Results 61 - 80 of 288 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29147 | 5' | -65.4 | NC_006146.1 | + | 35047 | 0.71 | 0.261489 |
Target: 5'- -cGCCGGAgcgGGGCaGCGGACCCagGgGCa -3' miRNA: 3'- uaCGGUCU---CCCG-CGCCUGGGg-CgCGg -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 34954 | 0.71 | 0.261489 |
Target: 5'- -cGCCGGAgcgGGGCaGCGGACCCagGgGCa -3' miRNA: 3'- uaCGGUCU---CCCG-CGCCUGGGg-CgCGg -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 34862 | 0.71 | 0.261489 |
Target: 5'- -cGCCGGAgcgGGGCaGCGGACCCagGgGCa -3' miRNA: 3'- uaCGGUCU---CCCG-CGCCUGGGg-CgCGg -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 34769 | 0.71 | 0.261489 |
Target: 5'- -cGCCGGAgcgGGGCaGCGGACCCagGgGCa -3' miRNA: 3'- uaCGGUCU---CCCG-CGCCUGGGg-CgCGg -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 34676 | 0.71 | 0.261489 |
Target: 5'- -cGCCGGAgcgGGGCaGCGGACCCagGgGCa -3' miRNA: 3'- uaCGGUCU---CCCG-CGCCUGGGg-CgCGg -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 72565 | 0.71 | 0.267384 |
Target: 5'- -gGaCCGGGacGGGcCGCGcccGGCCCCGUGCCa -3' miRNA: 3'- uaC-GGUCU--CCC-GCGC---CUGGGGCGCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 23081 | 0.71 | 0.267384 |
Target: 5'- -gGCCGGAGGGaccccgGCGG-CCCggUGUGCCa -3' miRNA: 3'- uaCGGUCUCCCg-----CGCCuGGG--GCGCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 26159 | 0.71 | 0.267384 |
Target: 5'- -gGCCGGAGGGaccccgGCGG-CCCggUGUGCCa -3' miRNA: 3'- uaCGGUCUCCCg-----CGCCuGGG--GCGCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 29237 | 0.71 | 0.267384 |
Target: 5'- -gGCCGGAGGGaccccgGCGG-CCCggUGUGCCa -3' miRNA: 3'- uaCGGUCUCCCg-----CGCCuGGG--GCGCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 13848 | 0.71 | 0.267384 |
Target: 5'- -gGCCGGAGGGaccccgGCGG-CCCggUGUGCCa -3' miRNA: 3'- uaCGGUCUCCCg-----CGCCuGGG--GCGCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 20003 | 0.71 | 0.267384 |
Target: 5'- -gGCCGGAGGGaccccgGCGG-CCCggUGUGCCa -3' miRNA: 3'- uaCGGUCUCCCg-----CGCCuGGG--GCGCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 16926 | 0.71 | 0.267384 |
Target: 5'- -gGCCGGAGGGaccccgGCGG-CCCggUGUGCCa -3' miRNA: 3'- uaCGGUCUCCCg-----CGCCuGGG--GCGCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 15312 | 0.71 | 0.269772 |
Target: 5'- -gGCCGGAGGccaGCcccggugugccccugGCGGgcGCCCCGCGCg -3' miRNA: 3'- uaCGGUCUCC---CG---------------CGCC--UGGGGCGCGg -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 52920 | 0.71 | 0.273386 |
Target: 5'- -gGCCccccGGGGGCGCuGGCCUCGUccGCCg -3' miRNA: 3'- uaCGGu---CUCCCGCGcCUGGGGCG--CGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 169357 | 0.71 | 0.273386 |
Target: 5'- uGUGCCuggcgggggAGAGGGgGCaGGGCUggcgccgggCCGCGCCc -3' miRNA: 3'- -UACGG---------UCUCCCgCG-CCUGG---------GGCGCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 167493 | 0.71 | 0.273386 |
Target: 5'- uGUGCCuggcgggggAGAGGGgGCaGGGCUggcgccgggCCGCGCCc -3' miRNA: 3'- -UACGG---------UCUCCCgCG-CCUGG---------GGCGCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 168425 | 0.71 | 0.273386 |
Target: 5'- uGUGCCuggcgggggAGAGGGgGCaGGGCUggcgccgggCCGCGCCc -3' miRNA: 3'- -UACGG---------UCUCCCgCG-CCUGG---------GGCGCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 170288 | 0.71 | 0.273386 |
Target: 5'- uGUGCCuggcgggggAGAGGGgGCaGGGCUggcgccgggCCGCGCCc -3' miRNA: 3'- -UACGG---------UCUCCCgCG-CCUGG---------GGCGCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 2074 | 0.7 | 0.277651 |
Target: 5'- gGUGCCcccgcGAGGGUcccCGGGccgccccggggcucCCCCGCGCCg -3' miRNA: 3'- -UACGGu----CUCCCGc--GCCU--------------GGGGCGCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 1142 | 0.7 | 0.277651 |
Target: 5'- gGUGCCcccgcGAGGGUcccCGGGccgccccggggcucCCCCGCGCCg -3' miRNA: 3'- -UACGGu----CUCCCGc--GCCU--------------GGGGCGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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