miRNA display CGI


Results 61 - 80 of 288 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29147 5' -65.4 NC_006146.1 + 33704 0.67 0.441235
Target:  5'- --uCCAGGaccGGGCaGCGGACCCgGCagcgGCCc -3'
miRNA:   3'- uacGGUCU---CCCG-CGCCUGGGgCG----CGG- -5'
29147 5' -65.4 NC_006146.1 + 33747 0.71 0.261489
Target:  5'- -cGCCGGAgcgGGGCaGCGGACCCagGgGCa -3'
miRNA:   3'- uaCGGUCU---CCCG-CGCCUGGGg-CgCGg -5'
29147 5' -65.4 NC_006146.1 + 33797 0.67 0.441235
Target:  5'- --uCCAGGaccGGGCaGCGGACCCgGCagcgGCCc -3'
miRNA:   3'- uacGGUCU---CCCG-CGCCUGGGgCG----CGG- -5'
29147 5' -65.4 NC_006146.1 + 33840 0.71 0.261489
Target:  5'- -cGCCGGAgcgGGGCaGCGGACCCagGgGCa -3'
miRNA:   3'- uaCGGUCU---CCCG-CGCCUGGGg-CgCGg -5'
29147 5' -65.4 NC_006146.1 + 33890 0.67 0.441235
Target:  5'- --uCCAGGaccGGGCaGCGGACCCgGCagcgGCCc -3'
miRNA:   3'- uacGGUCU---CCCG-CGCCUGGGgCG----CGG- -5'
29147 5' -65.4 NC_006146.1 + 33932 0.71 0.261489
Target:  5'- -cGCCGGAgcgGGGCaGCGGACCCagGgGCa -3'
miRNA:   3'- uaCGGUCU---CCCG-CGCCUGGGg-CgCGg -5'
29147 5' -65.4 NC_006146.1 + 33982 0.67 0.441235
Target:  5'- --uCCAGGaccGGGCaGCGGACCCgGCagcgGCCc -3'
miRNA:   3'- uacGGUCU---CCCG-CGCCUGGGgCG----CGG- -5'
29147 5' -65.4 NC_006146.1 + 34025 0.71 0.261489
Target:  5'- -cGCCGGAgcgGGGCaGCGGACCCagGgGCa -3'
miRNA:   3'- uaCGGUCU---CCCG-CGCCUGGGg-CgCGg -5'
29147 5' -65.4 NC_006146.1 + 34028 0.69 0.332292
Target:  5'- -gGgCAGGcGGGCGUGGuCCCgGgGCCu -3'
miRNA:   3'- uaCgGUCU-CCCGCGCCuGGGgCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 34075 0.67 0.441235
Target:  5'- --uCCAGGaccGGGCaGCGGACCCgGCagcgGCCc -3'
miRNA:   3'- uacGGUCU---CCCG-CGCCUGGGgCG----CGG- -5'
29147 5' -65.4 NC_006146.1 + 34089 0.69 0.353897
Target:  5'- gGUcCCGGGGGGCaGcCGcGACCCagCGCGCCc -3'
miRNA:   3'- -UAcGGUCUCCCG-C-GC-CUGGG--GCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 34118 0.71 0.261489
Target:  5'- -cGCCGGAgcgGGGCaGCGGACCCagGgGCa -3'
miRNA:   3'- uaCGGUCU---CCCG-CGCCUGGGg-CgCGg -5'
29147 5' -65.4 NC_006146.1 + 34168 0.67 0.441235
Target:  5'- --uCCAGGaccGGGCaGCGGACCCgGCagcgGCCc -3'
miRNA:   3'- uacGGUCU---CCCG-CGCCUGGGgCG----CGG- -5'
29147 5' -65.4 NC_006146.1 + 34187 0.74 0.172222
Target:  5'- -aGCCGGAcccuGGUGCcaggcagGGACCUCGCGCCg -3'
miRNA:   3'- uaCGGUCUc---CCGCG-------CCUGGGGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 34211 0.71 0.261489
Target:  5'- -cGCCGGAgcgGGGCaGCGGACCCagGgGCa -3'
miRNA:   3'- uaCGGUCU---CCCG-CGCCUGGGg-CgCGg -5'
29147 5' -65.4 NC_006146.1 + 34261 0.67 0.441235
Target:  5'- --uCCAGGaccGGGCaGCGGACCCgGCagcgGCCc -3'
miRNA:   3'- uacGGUCU---CCCG-CGCCUGGGgCG----CGG- -5'
29147 5' -65.4 NC_006146.1 + 34304 0.71 0.261489
Target:  5'- -cGCCGGAgcgGGGCaGCGGACCCagGgGCa -3'
miRNA:   3'- uaCGGUCU---CCCG-CGCCUGGGg-CgCGg -5'
29147 5' -65.4 NC_006146.1 + 34354 0.67 0.441235
Target:  5'- --uCCAGGaccGGGCaGCGGACCCgGCagcgGCCc -3'
miRNA:   3'- uacGGUCU---CCCG-CGCCUGGGgCG----CGG- -5'
29147 5' -65.4 NC_006146.1 + 34397 0.71 0.261489
Target:  5'- -cGCCGGAgcgGGGCaGCGGACCCagGgGCa -3'
miRNA:   3'- uaCGGUCU---CCCG-CGCCUGGGg-CgCGg -5'
29147 5' -65.4 NC_006146.1 + 34447 0.67 0.441235
Target:  5'- --uCCAGGaccGGGCaGCGGACCCgGCagcgGCCc -3'
miRNA:   3'- uacGGUCU---CCCG-CGCCUGGGgCG----CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.