miRNA display CGI


Results 61 - 80 of 288 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29147 5' -65.4 NC_006146.1 + 146762 0.67 0.441235
Target:  5'- -cGCCAGAGGccgagucaCGCGacagguacaGGCCCgGUGCCa -3'
miRNA:   3'- uaCGGUCUCCc-------GCGC---------CUGGGgCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 146497 0.7 0.305018
Target:  5'- -cGCCGGuuGGGCuGuuGugCCUGCGCCu -3'
miRNA:   3'- uaCGGUCu-CCCG-CgcCugGGGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 146131 0.69 0.325309
Target:  5'- -gGCCcGAGGGCcUGaaaGGCCCCGgCGCCu -3'
miRNA:   3'- uaCGGuCUCCCGcGC---CUGGGGC-GCGG- -5'
29147 5' -65.4 NC_006146.1 + 145476 0.71 0.250017
Target:  5'- cUGCCccaGGAGaGGC-CGGACCCCGC-CUg -3'
miRNA:   3'- uACGG---UCUC-CCGcGCCUGGGGCGcGG- -5'
29147 5' -65.4 NC_006146.1 + 144399 0.67 0.441235
Target:  5'- cUGCCAGGGGGCaaaGgGGGCUCagaGgGCa -3'
miRNA:   3'- uACGGUCUCCCG---CgCCUGGGg--CgCGg -5'
29147 5' -65.4 NC_006146.1 + 143419 0.7 0.305018
Target:  5'- -cGCCGGuuGGGCuGuuGugCCUGCGCCu -3'
miRNA:   3'- uaCGGUCu-CCCG-CgcCugGGGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 143053 0.69 0.325309
Target:  5'- -gGCCcGAGGGCcUGaaaGGCCCCGgCGCCu -3'
miRNA:   3'- uaCGGuCUCCCGcGC---CUGGGGC-GCGG- -5'
29147 5' -65.4 NC_006146.1 + 142398 0.71 0.250017
Target:  5'- cUGCCccaGGAGaGGC-CGGACCCCGC-CUg -3'
miRNA:   3'- uACGG---UCUC-CCGcGCCUGGGGCGcGG- -5'
29147 5' -65.4 NC_006146.1 + 141321 0.67 0.441235
Target:  5'- cUGCCAGGGGGCaaaGgGGGCUCagaGgGCa -3'
miRNA:   3'- uACGGUCUCCCG---CgCCUGGGg--CgCGg -5'
29147 5' -65.4 NC_006146.1 + 139366 0.67 0.461864
Target:  5'- -cGCCGGGGGGgGUgccugcuguuuaguaGGagaagGCCCCcacgGCGCCg -3'
miRNA:   3'- uaCGGUCUCCCgCG---------------CC-----UGGGG----CGCGG- -5'
29147 5' -65.4 NC_006146.1 + 139278 0.66 0.484772
Target:  5'- gGUGgCAGAGGGCcCGG-CCuuGaGCCc -3'
miRNA:   3'- -UACgGUCUCCCGcGCCuGGggCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 139063 0.67 0.467101
Target:  5'- --cCCAGAGGGCGgaagcUGGACUuuG-GCCa -3'
miRNA:   3'- uacGGUCUCCCGC-----GCCUGGggCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 138017 0.74 0.172222
Target:  5'- -aGCCGGAcccuGGUGCcaggcagGGACCUCGCGCCg -3'
miRNA:   3'- uaCGGUCUc---CCGCG-------CCUGGGGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 137914 0.66 0.502756
Target:  5'- -gGCCGGggguuccgGGGGCaGcCGcGACCCagCGCGCCc -3'
miRNA:   3'- uaCGGUC--------UCCCG-C-GC-CUGGG--GCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 137857 0.7 0.311672
Target:  5'- -gGUgGGuGGGCGUgucccGGGCCCCGCcCCg -3'
miRNA:   3'- uaCGgUCuCCCGCG-----CCUGGGGCGcGG- -5'
29147 5' -65.4 NC_006146.1 + 131207 0.69 0.332292
Target:  5'- cUGCCuccGGAGcGGCGCugcaggcccaGGAgCCCGcCGCCu -3'
miRNA:   3'- uACGG---UCUC-CCGCG----------CCUgGGGC-GCGG- -5'
29147 5' -65.4 NC_006146.1 + 129628 0.7 0.318436
Target:  5'- -cGCCGGGuccuccgcGGGCGCGuGCUCCGC-CCg -3'
miRNA:   3'- uaCGGUCU--------CCCGCGCcUGGGGCGcGG- -5'
29147 5' -65.4 NC_006146.1 + 129398 0.69 0.353897
Target:  5'- -cGUCAGccGGGCGUcGuCCCCGCGCa -3'
miRNA:   3'- uaCGGUCu-CCCGCGcCuGGGGCGCGg -5'
29147 5' -65.4 NC_006146.1 + 129369 0.7 0.305018
Target:  5'- -aGCCucaGGAGGaGCccGCGGAUCCCGgGCg -3'
miRNA:   3'- uaCGG---UCUCC-CG--CGCCUGGGGCgCGg -5'
29147 5' -65.4 NC_006146.1 + 129233 0.66 0.484772
Target:  5'- -aGCCAGcAGGGa-CGGGCCCaggugagGCGCg -3'
miRNA:   3'- uaCGGUC-UCCCgcGCCUGGGg------CGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.