miRNA display CGI


Results 41 - 60 of 288 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29147 5' -65.4 NC_006146.1 + 44371 0.7 0.318436
Target:  5'- gGUGCCAGAcccccgcccgggGGGCGUgugGGGCCgggcaCgGCGCCu -3'
miRNA:   3'- -UACGGUCU------------CCCGCG---CCUGG-----GgCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 26159 0.71 0.267384
Target:  5'- -gGCCGGAGGGaccccgGCGG-CCCggUGUGCCa -3'
miRNA:   3'- uaCGGUCUCCCg-----CGCCuGGG--GCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 34187 0.74 0.172222
Target:  5'- -aGCCGGAcccuGGUGCcaggcagGGACCUCGCGCCg -3'
miRNA:   3'- uaCGGUCUc---CCGCG-------CCUGGGGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 167654 0.7 0.311672
Target:  5'- cGUGCCGG-GGGCcCGGGggcgugUCCCGCGaCCc -3'
miRNA:   3'- -UACGGUCuCCCGcGCCU------GGGGCGC-GG- -5'
29147 5' -65.4 NC_006146.1 + 120027 0.74 0.160739
Target:  5'- -gGCCAGuccGGGCaCaGACCCCGCGCg -3'
miRNA:   3'- uaCGGUCu--CCCGcGcCUGGGGCGCGg -5'
29147 5' -65.4 NC_006146.1 + 168338 0.68 0.408052
Target:  5'- -gGCCGGGGccuGGCGgGGGCCa-GCGCg -3'
miRNA:   3'- uaCGGUCUC---CCGCgCCUGGggCGCGg -5'
29147 5' -65.4 NC_006146.1 + 44946 0.74 0.176765
Target:  5'- -gGCCAG-GGGCGCGGggagGCCCCGgGg- -3'
miRNA:   3'- uaCGGUCuCCCGCGCC----UGGGGCgCgg -5'
29147 5' -65.4 NC_006146.1 + 53461 0.68 0.400003
Target:  5'- cUGCCcGGGaGGCGCGGguGCCUCGUcgGUCa -3'
miRNA:   3'- uACGGuCUC-CCGCGCC--UGGGGCG--CGG- -5'
29147 5' -65.4 NC_006146.1 + 59724 0.68 0.388907
Target:  5'- -gGUCGGGGGGCGCaucucucgccuCCCCgaGCGCCu -3'
miRNA:   3'- uaCGGUCUCCCGCGccu--------GGGG--CGCGG- -5'
29147 5' -65.4 NC_006146.1 + 56578 0.69 0.360569
Target:  5'- -cGUCAGGggcggccGGGCGCcGAgCCCGcCGCCg -3'
miRNA:   3'- uaCGGUCU-------CCCGCGcCUgGGGC-GCGG- -5'
29147 5' -65.4 NC_006146.1 + 168586 0.69 0.353897
Target:  5'- cGUGCCGGGGGaccCGgGGGCguguCCCGCGaCCc -3'
miRNA:   3'- -UACGGUCUCCc--GCgCCUG----GGGCGC-GG- -5'
29147 5' -65.4 NC_006146.1 + 47834 0.69 0.346586
Target:  5'- cUGCCAGAGcGCGgcucucgaGGACCCUcuccuccaGCGCCc -3'
miRNA:   3'- uACGGUCUCcCGCg-------CCUGGGG--------CGCGG- -5'
29147 5' -65.4 NC_006146.1 + 97850 0.69 0.325309
Target:  5'- cUGgaGGAGGGgGCcgccGACCCCGgGCCg -3'
miRNA:   3'- uACggUCUCCCgCGc---CUGGGGCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 129369 0.7 0.305018
Target:  5'- -aGCCucaGGAGGaGCccGCGGAUCCCGgGCg -3'
miRNA:   3'- uaCGG---UCUCC-CG--CGCCUGGGGCgCGg -5'
29147 5' -65.4 NC_006146.1 + 44078 0.7 0.298474
Target:  5'- cAUGCCGGgacuGGGGUGguuccaccuCGGGCCgCGCGCUc -3'
miRNA:   3'- -UACGGUC----UCCCGC---------GCCUGGgGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 169357 0.71 0.273386
Target:  5'- uGUGCCuggcgggggAGAGGGgGCaGGGCUggcgccgggCCGCGCCc -3'
miRNA:   3'- -UACGG---------UCUCCCgCG-CCUGG---------GGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 52920 0.71 0.273386
Target:  5'- -gGCCccccGGGGGCGCuGGCCUCGUccGCCg -3'
miRNA:   3'- uaCGGu---CUCCCGCGcCUGGGGCG--CGG- -5'
29147 5' -65.4 NC_006146.1 + 16926 0.71 0.267384
Target:  5'- -gGCCGGAGGGaccccgGCGG-CCCggUGUGCCa -3'
miRNA:   3'- uaCGGUCUCCCg-----CGCCuGGG--GCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 129111 0.71 0.255701
Target:  5'- -cGgCAGAGGGCcugagaGCGGGCgCCCGgGCg -3'
miRNA:   3'- uaCgGUCUCCCG------CGCCUG-GGGCgCGg -5'
29147 5' -65.4 NC_006146.1 + 57384 0.73 0.1853
Target:  5'- -cGCCGGuGGGC-UGG-CCCCGCGaCCg -3'
miRNA:   3'- uaCGGUCuCCCGcGCCuGGGGCGC-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.