miRNA display CGI


Results 21 - 40 of 288 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29147 5' -65.4 NC_006146.1 + 169357 0.71 0.273386
Target:  5'- uGUGCCuggcgggggAGAGGGgGCaGGGCUggcgccgggCCGCGCCc -3'
miRNA:   3'- -UACGG---------UCUCCCgCG-CCUGG---------GGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 52920 0.71 0.273386
Target:  5'- -gGCCccccGGGGGCGCuGGCCUCGUccGCCg -3'
miRNA:   3'- uaCGGu---CUCCCGCGcCUGGGGCG--CGG- -5'
29147 5' -65.4 NC_006146.1 + 121143 0.72 0.213113
Target:  5'- -aGCCGGcgucuGGGCcUGGGCCgCGCGCCc -3'
miRNA:   3'- uaCGGUCu----CCCGcGCCUGGgGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 138017 0.74 0.172222
Target:  5'- -aGCCGGAcccuGGUGCcaggcagGGACCUCGCGCCg -3'
miRNA:   3'- uaCGGUCUc---CCGCG-------CCUGGGGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 54864 0.69 0.324617
Target:  5'- -gGCCGGGaaaaauGGGCuGCGGGCguagcgggguccgCUCGCGCCg -3'
miRNA:   3'- uaCGGUCU------CCCG-CGCCUG-------------GGGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 45409 0.7 0.298474
Target:  5'- -cGUCGGuGGGCcagcGCGaGGCCCCG-GCCg -3'
miRNA:   3'- uaCGGUCuCCCG----CGC-CUGGGGCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 26159 0.71 0.267384
Target:  5'- -gGCCGGAGGGaccccgGCGG-CCCggUGUGCCa -3'
miRNA:   3'- uaCGGUCUCCCg-----CGCCuGGG--GCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 34187 0.74 0.172222
Target:  5'- -aGCCGGAcccuGGUGCcaggcagGGACCUCGCGCCg -3'
miRNA:   3'- uaCGGUCUc---CCGCG-------CCUGGGGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 44078 0.7 0.298474
Target:  5'- cAUGCCGGgacuGGGGUGguuccaccuCGGGCCgCGCGCUc -3'
miRNA:   3'- -UACGGUC----UCCCGC---------GCCUGGgGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 120027 0.74 0.160739
Target:  5'- -gGCCAGuccGGGCaCaGACCCCGCGCg -3'
miRNA:   3'- uaCGGUCu--CCCGcGcCUGGGGCGCGg -5'
29147 5' -65.4 NC_006146.1 + 29237 0.71 0.267384
Target:  5'- -gGCCGGAGGGaccccgGCGG-CCCggUGUGCCa -3'
miRNA:   3'- uaCGGUCUCCCg-----CGCCuGGG--GCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 170288 0.71 0.273386
Target:  5'- uGUGCCuggcgggggAGAGGGgGCaGGGCUggcgccgggCCGCGCCc -3'
miRNA:   3'- -UACGG---------UCUCCCgCG-CCUGG---------GGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 16926 0.71 0.267384
Target:  5'- -gGCCGGAGGGaccccgGCGG-CCCggUGUGCCa -3'
miRNA:   3'- uaCGGUCUCCCg-----CGCCuGGG--GCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 129111 0.71 0.255701
Target:  5'- -cGgCAGAGGGCcugagaGCGGGCgCCCGgGCg -3'
miRNA:   3'- uaCgGUCUCCCG------CGCCUG-GGGCgCGg -5'
29147 5' -65.4 NC_006146.1 + 57384 0.73 0.1853
Target:  5'- -cGCCGGuGGGC-UGG-CCCCGCGaCCg -3'
miRNA:   3'- uaCGGUCuCCCGcGCCuGGGGCGC-GG- -5'
29147 5' -65.4 NC_006146.1 + 44946 0.74 0.176765
Target:  5'- -gGCCAG-GGGCGCGGggagGCCCCGgGg- -3'
miRNA:   3'- uaCGGUCuCCCGCGCC----UGGGGCgCgg -5'
29147 5' -65.4 NC_006146.1 + 47834 0.69 0.346586
Target:  5'- cUGCCAGAGcGCGgcucucgaGGACCCUcuccuccaGCGCCc -3'
miRNA:   3'- uACGGUCUCcCGCg-------CCUGGGG--------CGCGG- -5'
29147 5' -65.4 NC_006146.1 + 97850 0.69 0.325309
Target:  5'- cUGgaGGAGGGgGCcgccGACCCCGgGCCg -3'
miRNA:   3'- uACggUCUCCCgCGc---CUGGGGCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 137857 0.7 0.311672
Target:  5'- -gGUgGGuGGGCGUgucccGGGCCCCGCcCCg -3'
miRNA:   3'- uaCGgUCuCCCGCG-----CCUGGGGCGcGG- -5'
29147 5' -65.4 NC_006146.1 + 154887 0.7 0.305018
Target:  5'- -cGUCGGGGGGCa-GGGCCUCGC-CCg -3'
miRNA:   3'- uaCGGUCUCCCGcgCCUGGGGCGcGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.