miRNA display CGI


Results 21 - 40 of 288 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29147 5' -65.4 NC_006146.1 + 161435 1.08 0.000577
Target:  5'- gAUGCCAGAGGGCGCGGACCCCGCGCCc -3'
miRNA:   3'- -UACGGUCUCCCGCGCCUGGGGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 53494 0.7 0.307667
Target:  5'- -gGCCGGGGGuGCggucuggcucuggcuGCGGGCCgCGCGUg -3'
miRNA:   3'- uaCGGUCUCC-CG---------------CGCCUGGgGCGCGg -5'
29147 5' -65.4 NC_006146.1 + 129369 0.7 0.305018
Target:  5'- -aGCCucaGGAGGaGCccGCGGAUCCCGgGCg -3'
miRNA:   3'- uaCGG---UCUCC-CG--CGCCUGGGGCgCGg -5'
29147 5' -65.4 NC_006146.1 + 167493 0.71 0.273386
Target:  5'- uGUGCCuggcgggggAGAGGGgGCaGGGCUggcgccgggCCGCGCCc -3'
miRNA:   3'- -UACGG---------UCUCCCgCG-CCUGG---------GGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 128194 0.71 0.255701
Target:  5'- -gGCCcaGGGGGGCGcCGcGGCgCCGgGCCa -3'
miRNA:   3'- uaCGG--UCUCCCGC-GC-CUGgGGCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 34028 0.69 0.332292
Target:  5'- -gGgCAGGcGGGCGUGGuCCCgGgGCCu -3'
miRNA:   3'- uaCgGUCU-CCCGCGCCuGGGgCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 167654 0.7 0.311672
Target:  5'- cGUGCCGG-GGGCcCGGGggcgugUCCCGCGaCCc -3'
miRNA:   3'- -UACGGUCuCCCGcGCCU------GGGGCGC-GG- -5'
29147 5' -65.4 NC_006146.1 + 97401 0.73 0.203464
Target:  5'- -aGCCu----GCGCGuGACCCCGCGCCu -3'
miRNA:   3'- uaCGGucuccCGCGC-CUGGGGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 167093 0.7 0.279496
Target:  5'- aGUGa-GGGGGGCGUGGccaucCCCCGCGUg -3'
miRNA:   3'- -UACggUCUCCCGCGCCu----GGGGCGCGg -5'
29147 5' -65.4 NC_006146.1 + 169357 0.71 0.273386
Target:  5'- uGUGCCuggcgggggAGAGGGgGCaGGGCUggcgccgggCCGCGCCc -3'
miRNA:   3'- -UACGG---------UCUCCCgCG-CCUGG---------GGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 48627 0.73 0.1853
Target:  5'- gGUGCC-GuGGGgGCGGGCUCCGgGCg -3'
miRNA:   3'- -UACGGuCuCCCgCGCCUGGGGCgCGg -5'
29147 5' -65.4 NC_006146.1 + 67254 0.73 0.1853
Target:  5'- -gGCUGGGGGGauagGCGGGCCCCuccuccgcGUGCCa -3'
miRNA:   3'- uaCGGUCUCCCg---CGCCUGGGG--------CGCGG- -5'
29147 5' -65.4 NC_006146.1 + 57332 0.69 0.353897
Target:  5'- -gGCUcucuGGGGGCG-GGGCCCCGgGUg -3'
miRNA:   3'- uaCGGu---CUCCCGCgCCUGGGGCgCGg -5'
29147 5' -65.4 NC_006146.1 + 131207 0.69 0.332292
Target:  5'- cUGCCuccGGAGcGGCGCugcaggcccaGGAgCCCGcCGCCu -3'
miRNA:   3'- uACGG---UCUC-CCGCG----------CCUgGGGC-GCGG- -5'
29147 5' -65.4 NC_006146.1 + 154887 0.7 0.305018
Target:  5'- -cGUCGGGGGGCa-GGGCCUCGC-CCg -3'
miRNA:   3'- uaCGGUCUCCCGcgCCUGGGGCGcGG- -5'
29147 5' -65.4 NC_006146.1 + 20003 0.71 0.267384
Target:  5'- -gGCCGGAGGGaccccgGCGG-CCCggUGUGCCa -3'
miRNA:   3'- uaCGGUCUCCCg-----CGCCuGGG--GCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 13848 0.71 0.267384
Target:  5'- -gGCCGGAGGGaccccgGCGG-CCCggUGUGCCa -3'
miRNA:   3'- uaCGGUCUCCCg-----CGCCuGGG--GCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 44946 0.74 0.176765
Target:  5'- -gGCCAG-GGGCGCGGggagGCCCCGgGg- -3'
miRNA:   3'- uaCGGUCuCCCGCGCC----UGGGGCgCgg -5'
29147 5' -65.4 NC_006146.1 + 168425 0.71 0.273386
Target:  5'- uGUGCCuggcgggggAGAGGGgGCaGGGCUggcgccgggCCGCGCCc -3'
miRNA:   3'- -UACGG---------UCUCCCgCG-CCUGG---------GGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 55706 0.7 0.292039
Target:  5'- -cGCCGGGGGGCucugcccgccGCuGGCCuCCGCGUa -3'
miRNA:   3'- uaCGGUCUCCCG----------CGcCUGG-GGCGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.