miRNA display CGI


Results 21 - 40 of 288 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29147 5' -65.4 NC_006146.1 + 11817 0.68 0.384213
Target:  5'- cUGCaGGAGGGgaagGUgGGACCCCuuGCGCCg -3'
miRNA:   3'- uACGgUCUCCCg---CG-CCUGGGG--CGCGG- -5'
29147 5' -65.4 NC_006146.1 + 11989 0.66 0.530257
Target:  5'- cUGCCAG-GGGCagaagagcucGCuGACUCCgGUGCCc -3'
miRNA:   3'- uACGGUCuCCCG----------CGcCUGGGG-CGCGG- -5'
29147 5' -65.4 NC_006146.1 + 12072 0.74 0.164619
Target:  5'- -cGCUuugcGAGGGC-CGGGCCCCG-GCCg -3'
miRNA:   3'- uaCGGu---CUCCCGcGCCUGGGGCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 13357 0.67 0.449768
Target:  5'- aAUGUCAGAGGGgagcCGCccucgGGGCCCaGgGCCc -3'
miRNA:   3'- -UACGGUCUCCC----GCG-----CCUGGGgCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 13848 0.71 0.267384
Target:  5'- -gGCCGGAGGGaccccgGCGG-CCCggUGUGCCa -3'
miRNA:   3'- uaCGGUCUCCCg-----CGCCuGGG--GCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 14559 0.67 0.458391
Target:  5'- cUGCUGGgccgcuuucGGGGCGUgagccccaucccGGA-CCCGCGCCu -3'
miRNA:   3'- uACGGUC---------UCCCGCG------------CCUgGGGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 14821 0.7 0.292039
Target:  5'- -gGCCggaGGAGGGCacggucuCGGGCCCgGgGCCg -3'
miRNA:   3'- uaCGG---UCUCCCGc------GCCUGGGgCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 15024 0.72 0.222642
Target:  5'- uUGCCAGggaGGGGCGCcuggccaGGGCCCgcCGgGCCu -3'
miRNA:   3'- uACGGUC---UCCCGCG-------CCUGGG--GCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 15312 0.71 0.269772
Target:  5'- -gGCCGGAGGccaGCcccggugugccccugGCGGgcGCCCCGCGCg -3'
miRNA:   3'- uaCGGUCUCC---CG---------------CGCC--UGGGGCGCGg -5'
29147 5' -65.4 NC_006146.1 + 15883 0.77 0.10901
Target:  5'- cGUGCCGGAGGGCucGCuGGCCUCGaGCCa -3'
miRNA:   3'- -UACGGUCUCCCG--CGcCUGGGGCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 15968 0.68 0.368841
Target:  5'- -aGaCCuGGGGGCGUu--CCCUGCGCCu -3'
miRNA:   3'- uaC-GGuCUCCCGCGccuGGGGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 16435 0.67 0.449768
Target:  5'- aAUGUCAGAGGGgagcCGCccucgGGGCCCaGgGCCc -3'
miRNA:   3'- -UACGGUCUCCC----GCG-----CCUGGGgCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 16926 0.71 0.267384
Target:  5'- -gGCCGGAGGGaccccgGCGG-CCCggUGUGCCa -3'
miRNA:   3'- uaCGGUCUCCCg-----CGCCuGGG--GCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 17575 0.69 0.324617
Target:  5'- -cGCCAGAucaaucggaugcuGGGCGaccuggccCGGGCCUgGUGCCu -3'
miRNA:   3'- uaCGGUCU-------------CCCGC--------GCCUGGGgCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 19513 0.67 0.449768
Target:  5'- aAUGUCAGAGGGgagcCGCccucgGGGCCCaGgGCCc -3'
miRNA:   3'- -UACGGUCUCCC----GCG-----CCUGGGgCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 19967 0.66 0.527481
Target:  5'- -gGCCGG-GGGCGUcugcgaggucaggaGGcCCCaCGaCGCCg -3'
miRNA:   3'- uaCGGUCuCCCGCG--------------CCuGGG-GC-GCGG- -5'
29147 5' -65.4 NC_006146.1 + 20003 0.71 0.267384
Target:  5'- -gGCCGGAGGGaccccgGCGG-CCCggUGUGCCa -3'
miRNA:   3'- uaCGGUCUCCCg-----CGCCuGGG--GCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 21030 0.68 0.384213
Target:  5'- aGUGCCggggauucucGGAGGGCGa-GACgCUGCGCUu -3'
miRNA:   3'- -UACGG----------UCUCCCGCgcCUGgGGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 22591 0.67 0.449768
Target:  5'- aAUGUCAGAGGGgagcCGCccucgGGGCCCaGgGCCc -3'
miRNA:   3'- -UACGGUCUCCC----GCG-----CCUGGGgCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 23081 0.71 0.267384
Target:  5'- -gGCCGGAGGGaccccgGCGG-CCCggUGUGCCa -3'
miRNA:   3'- uaCGGUCUCCCg-----CGCCuGGG--GCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.