miRNA display CGI


Results 1 - 20 of 288 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29147 5' -65.4 NC_006146.1 + 211 0.69 0.346586
Target:  5'- gGUGCCcccgcgacGGuccccGGGGCGCcccuGGccucCCCCGCGCCg -3'
miRNA:   3'- -UACGG--------UC-----UCCCGCG----CCu---GGGGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 284 0.71 0.250017
Target:  5'- -aGCCcgGGAagacccGGGgGCGGGCCCgGCGCg -3'
miRNA:   3'- uaCGG--UCU------CCCgCGCCUGGGgCGCGg -5'
29147 5' -65.4 NC_006146.1 + 587 0.84 0.034154
Target:  5'- -gGCCGG-GGGCGCGG-CCCgGCGCCa -3'
miRNA:   3'- uaCGGUCuCCCGCGCCuGGGgCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 831 0.66 0.48299
Target:  5'- -cGCCGGccauccccacGCGCGG-CCCCGgGCCc -3'
miRNA:   3'- uaCGGUCucc-------CGCGCCuGGGGCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 1142 0.7 0.277651
Target:  5'- gGUGCCcccgcGAGGGUcccCGGGccgccccggggcucCCCCGCGCCg -3'
miRNA:   3'- -UACGGu----CUCCCGc--GCCU--------------GGGGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 1215 0.69 0.325309
Target:  5'- -aGCCcgGGAagacccGGGgGCGGGCCaCgCGCGCCc -3'
miRNA:   3'- uaCGG--UCU------CCCgCGCCUGG-G-GCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 1518 0.84 0.034154
Target:  5'- -gGCCGG-GGGCGCGG-CCCgGCGCCa -3'
miRNA:   3'- uaCGGUCuCCCGCGCCuGGGgCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 1763 0.66 0.48299
Target:  5'- -cGCCGGccauccccacGCGCGG-CCCCGgGCCc -3'
miRNA:   3'- uaCGGUCucc-------CGCGCCuGGGGCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 2074 0.7 0.277651
Target:  5'- gGUGCCcccgcGAGGGUcccCGGGccgccccggggcucCCCCGCGCCg -3'
miRNA:   3'- -UACGGu----CUCCCGc--GCCU--------------GGGGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 2147 0.69 0.325309
Target:  5'- -aGCCcgGGAagacccGGGgGCGGGCCaCgCGCGCCc -3'
miRNA:   3'- uaCGG--UCU------CCCgCGCCUGG-G-GCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 2450 0.84 0.034154
Target:  5'- -gGCCGG-GGGCGCGG-CCCgGCGCCa -3'
miRNA:   3'- uaCGGUCuCCCGCGCCuGGGgCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 2695 0.66 0.48299
Target:  5'- -cGCCGGccauccccacGCGCGG-CCCCGgGCCc -3'
miRNA:   3'- uaCGGUCucc-------CGCGCCuGGGGCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 3006 0.7 0.277651
Target:  5'- gGUGCCcccgcGAGGGUcccCGGGccgccccggggcucCCCCGCGCCg -3'
miRNA:   3'- -UACGGu----CUCCCGc--GCCU--------------GGGGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 3079 0.69 0.325309
Target:  5'- -aGCCcgGGAagacccGGGgGCGGGCCaCgCGCGCCc -3'
miRNA:   3'- uaCGG--UCU------CCCgCGCCUGG-G-GCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 3382 0.84 0.034154
Target:  5'- -gGCCGG-GGGCGCGG-CCCgGCGCCa -3'
miRNA:   3'- uaCGGUCuCCCGCGCCuGGGgCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 3627 0.66 0.48299
Target:  5'- -cGCCGGccauccccacGCGCGG-CCCCGgGCCc -3'
miRNA:   3'- uaCGGUCucc-------CGCGCCuGGGGCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 9150 0.66 0.530257
Target:  5'- uUGCCucuuucGGGGacgGCGGGCUcccaCCGUGCCa -3'
miRNA:   3'- uACGGuc----UCCCg--CGCCUGG----GGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 9454 0.79 0.076974
Target:  5'- uGUGUCAcGGuGGGCGCGGGgUCCGCGCCc -3'
miRNA:   3'- -UACGGU-CU-CCCGCGCCUgGGGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 9909 0.68 0.384213
Target:  5'- -gGCCAGgcaGGaGGCGaCGGAgCCCGCGa- -3'
miRNA:   3'- uaCGGUC---UC-CCGC-GCCUgGGGCGCgg -5'
29147 5' -65.4 NC_006146.1 + 10983 0.67 0.431956
Target:  5'- aAUGcCCAGAuGGUGCcccccaucuucgaGGGCCCCG-GCCu -3'
miRNA:   3'- -UAC-GGUCUcCCGCG-------------CCUGGGGCgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.