miRNA display CGI


Results 1 - 20 of 288 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29147 5' -65.4 NC_006146.1 + 115734 0.66 0.511857
Target:  5'- -aGCCu--GGGaCGCGGucacccCCCUGCGCa -3'
miRNA:   3'- uaCGGucuCCC-GCGCCu-----GGGGCGCGg -5'
29147 5' -65.4 NC_006146.1 + 169176 0.66 0.530257
Target:  5'- -cGCCugcagGGGGGGCcgGCGGGgcgUCCCGuCGUCa -3'
miRNA:   3'- uaCGG-----UCUCCCG--CGCCU---GGGGC-GCGG- -5'
29147 5' -65.4 NC_006146.1 + 92259 0.66 0.484772
Target:  5'- cUGCUGGGGGGCGgGcccGGCCUgGgGCUg -3'
miRNA:   3'- uACGGUCUCCCGCgC---CUGGGgCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 92289 0.66 0.484772
Target:  5'- cUGCUGGGGGGCGgGcccGGCCUgGgGCUg -3'
miRNA:   3'- uACGGUCUCCCGCgC---CUGGGgCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 122247 0.66 0.484772
Target:  5'- -gGCCAGGauucagaaGGCGCuGGGCaCCCGC-CCg -3'
miRNA:   3'- uaCGGUCUc-------CCGCG-CCUG-GGGCGcGG- -5'
29147 5' -65.4 NC_006146.1 + 129233 0.66 0.484772
Target:  5'- -aGCCAGcAGGGa-CGGGCCCaggugagGCGCg -3'
miRNA:   3'- uaCGGUC-UCCCgcGCCUGGGg------CGCGg -5'
29147 5' -65.4 NC_006146.1 + 72202 0.66 0.491032
Target:  5'- -gGCCGGAuGGGCGgGaGACCagcggccccacccaCUGCGCg -3'
miRNA:   3'- uaCGGUCU-CCCGCgC-CUGG--------------GGCGCGg -5'
29147 5' -65.4 NC_006146.1 + 118232 0.66 0.492828
Target:  5'- gAUGUCcuggacgAGGGGGCGaggcuGGACgCCCucauGCGCCa -3'
miRNA:   3'- -UACGG-------UCUCCCGCg----CCUG-GGG----CGCGG- -5'
29147 5' -65.4 NC_006146.1 + 162581 0.66 0.50185
Target:  5'- -cGCCacGGAGGGuCGgGGGCCCUaacagcacagagaGCGaCCc -3'
miRNA:   3'- uaCGG--UCUCCC-GCgCCUGGGG-------------CGC-GG- -5'
29147 5' -65.4 NC_006146.1 + 92229 0.66 0.511857
Target:  5'- cUGCU--GGGGgGCGGGCCCgGC-CUg -3'
miRNA:   3'- uACGGucUCCCgCGCCUGGGgCGcGG- -5'
29147 5' -65.4 NC_006146.1 + 92319 0.66 0.511857
Target:  5'- cUGCU--GGGGgGCGGGCCCgGC-CUg -3'
miRNA:   3'- uACGGucUCCCgCGCCUGGGgCGcGG- -5'
29147 5' -65.4 NC_006146.1 + 116118 0.66 0.530257
Target:  5'- cUGCCcaa-GGCGCGcucccuggcGGCCCUGCGCUg -3'
miRNA:   3'- uACGGucucCCGCGC---------CUGGGGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 122406 0.66 0.511857
Target:  5'- gGUGCUGGAGacccucaCGCGGAUCCUGgcCGCCa -3'
miRNA:   3'- -UACGGUCUCcc-----GCGCCUGGGGC--GCGG- -5'
29147 5' -65.4 NC_006146.1 + 150691 0.66 0.511857
Target:  5'- -gGCCAGGGGGaCGgaGGGCCUgGC-CUg -3'
miRNA:   3'- uaCGGUCUCCC-GCg-CCUGGGgCGcGG- -5'
29147 5' -65.4 NC_006146.1 + 47531 0.66 0.511857
Target:  5'- aGUGUCGG-GGGCGCcgccucGGuccuCCUCGCgGCCu -3'
miRNA:   3'- -UACGGUCuCCCGCG------CCu---GGGGCG-CGG- -5'
29147 5' -65.4 NC_006146.1 + 19967 0.66 0.527481
Target:  5'- -gGCCGG-GGGCGUcugcgaggucaggaGGcCCCaCGaCGCCg -3'
miRNA:   3'- uaCGGUCuCCCGCG--------------CCuGGG-GC-GCGG- -5'
29147 5' -65.4 NC_006146.1 + 52965 0.66 0.529331
Target:  5'- -cGCCGGAGaaGGCcgguagugcgcagGCGGACCugCCG-GCCg -3'
miRNA:   3'- uaCGGUCUC--CCG-------------CGCCUGG--GGCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 9150 0.66 0.530257
Target:  5'- uUGCCucuuucGGGGacgGCGGGCUcccaCCGUGCCa -3'
miRNA:   3'- uACGGuc----UCCCg--CGCCUGG----GGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 11989 0.66 0.530257
Target:  5'- cUGCCAG-GGGCagaagagcucGCuGACUCCgGUGCCc -3'
miRNA:   3'- uACGGUCuCCCG----------CGcCUGGGG-CGCGG- -5'
29147 5' -65.4 NC_006146.1 + 41831 0.66 0.530257
Target:  5'- -gGCCGGAugucGCGgGGGCUguCUGCGCCg -3'
miRNA:   3'- uaCGGUCUcc--CGCgCCUGG--GGCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.