miRNA display CGI


Results 1 - 20 of 288 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29147 5' -65.4 NC_006146.1 + 161435 1.08 0.000577
Target:  5'- gAUGCCAGAGGGCGCGGACCCCGCGCCc -3'
miRNA:   3'- -UACGGUCUCCCGCGCCUGGGGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 1518 0.84 0.034154
Target:  5'- -gGCCGG-GGGCGCGG-CCCgGCGCCa -3'
miRNA:   3'- uaCGGUCuCCCGCGCCuGGGgCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 587 0.84 0.034154
Target:  5'- -gGCCGG-GGGCGCGG-CCCgGCGCCa -3'
miRNA:   3'- uaCGGUCuCCCGCGCCuGGGgCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 2450 0.84 0.034154
Target:  5'- -gGCCGG-GGGCGCGG-CCCgGCGCCa -3'
miRNA:   3'- uaCGGUCuCCCGCGCCuGGGgCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 3382 0.84 0.034154
Target:  5'- -gGCCGG-GGGCGCGG-CCCgGCGCCa -3'
miRNA:   3'- uaCGGUCuCCCGCGCCuGGGgCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 42661 0.79 0.07139
Target:  5'- -gGcCCAGAGGuaGCGGAagagcuCCCCGCGCCg -3'
miRNA:   3'- uaC-GGUCUCCcgCGCCU------GGGGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 9454 0.79 0.076974
Target:  5'- uGUGUCAcGGuGGGCGCGGGgUCCGCGCCc -3'
miRNA:   3'- -UACGGU-CU-CCCGCGCCUgGGGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 161422 0.78 0.087221
Target:  5'- uGUGCCAGGcGGGUGUGG-CCCCGCGg- -3'
miRNA:   3'- -UACGGUCU-CCCGCGCCuGGGGCGCgg -5'
29147 5' -65.4 NC_006146.1 + 15883 0.77 0.10901
Target:  5'- cGUGCCGGAGGGCucGCuGGCCUCGaGCCa -3'
miRNA:   3'- -UACGGUCUCCCG--CGcCUGGGGCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 116010 0.76 0.111725
Target:  5'- -gGCCAGAcGGCgcgaGCGGACCCCGCuuacGCCc -3'
miRNA:   3'- uaCGGUCUcCCG----CGCCUGGGGCG----CGG- -5'
29147 5' -65.4 NC_006146.1 + 53600 0.75 0.139152
Target:  5'- gAUGCCGGggaaAGGGCGCGGcACCgggCCGUGCa -3'
miRNA:   3'- -UACGGUC----UCCCGCGCC-UGG---GGCGCGg -5'
29147 5' -65.4 NC_006146.1 + 120027 0.74 0.160739
Target:  5'- -gGCCAGuccGGGCaCaGACCCCGCGCg -3'
miRNA:   3'- uaCGGUCu--CCCGcGcCUGGGGCGCGg -5'
29147 5' -65.4 NC_006146.1 + 127395 0.74 0.164619
Target:  5'- gGUGUCuuGGGGC-UGGGCCCCGcCGCCg -3'
miRNA:   3'- -UACGGucUCCCGcGCCUGGGGC-GCGG- -5'
29147 5' -65.4 NC_006146.1 + 12072 0.74 0.164619
Target:  5'- -cGCUuugcGAGGGC-CGGGCCCCG-GCCg -3'
miRNA:   3'- uaCGGu---CUCCCGcGCCUGGGGCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 34187 0.74 0.172222
Target:  5'- -aGCCGGAcccuGGUGCcaggcagGGACCUCGCGCCg -3'
miRNA:   3'- uaCGGUCUc---CCGCG-------CCUGGGGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 138017 0.74 0.172222
Target:  5'- -aGCCGGAcccuGGUGCcaggcagGGACCUCGCGCCg -3'
miRNA:   3'- uaCGGUCUc---CCGCG-------CCUGGGGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 71796 0.74 0.176348
Target:  5'- -gGCCGGAGGGCaggcgcgggacguGCGGACCUgGCuGCg -3'
miRNA:   3'- uaCGGUCUCCCG-------------CGCCUGGGgCG-CGg -5'
29147 5' -65.4 NC_006146.1 + 44946 0.74 0.176765
Target:  5'- -gGCCAG-GGGCGCGGggagGCCCCGgGg- -3'
miRNA:   3'- uaCGGUCuCCCGCGCC----UGGGGCgCgg -5'
29147 5' -65.4 NC_006146.1 + 48627 0.73 0.1853
Target:  5'- gGUGCC-GuGGGgGCGGGCUCCGgGCg -3'
miRNA:   3'- -UACGGuCuCCCgCGCCUGGGGCgCGg -5'
29147 5' -65.4 NC_006146.1 + 67254 0.73 0.1853
Target:  5'- -gGCUGGGGGGauagGCGGGCCCCuccuccgcGUGCCa -3'
miRNA:   3'- uaCGGUCUCCCg---CGCCUGGGG--------CGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.