miRNA display CGI


Results 21 - 40 of 288 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29147 5' -65.4 NC_006146.1 + 57384 0.73 0.1853
Target:  5'- -cGCCGGuGGGC-UGG-CCCCGCGaCCg -3'
miRNA:   3'- uaCGGUCuCCCGcGCCuGGGGCGC-GG- -5'
29147 5' -65.4 NC_006146.1 + 97401 0.73 0.203464
Target:  5'- -aGCCu----GCGCGuGACCCCGCGCCu -3'
miRNA:   3'- uaCGGucuccCGCGC-CUGGGGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 70874 0.72 0.213113
Target:  5'- -cGCgAGAaGcCGCGGACCCCGcCGCCu -3'
miRNA:   3'- uaCGgUCUcCcGCGCCUGGGGC-GCGG- -5'
29147 5' -65.4 NC_006146.1 + 121143 0.72 0.213113
Target:  5'- -aGCCGGcgucuGGGCcUGGGCCgCGCGCCc -3'
miRNA:   3'- uaCGGUCu----CCCGcGCCUGGgGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 15024 0.72 0.222642
Target:  5'- uUGCCAGggaGGGGCGCcuggccaGGGCCCgcCGgGCCu -3'
miRNA:   3'- uACGGUC---UCCCGCG-------CCUGGG--GCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 42376 0.72 0.223153
Target:  5'- -cGCCAGggugggcgaGGGGCGCcccaGGgccACCCCGaCGCCg -3'
miRNA:   3'- uaCGGUC---------UCCCGCG----CC---UGGGGC-GCGG- -5'
29147 5' -65.4 NC_006146.1 + 57920 0.71 0.244439
Target:  5'- cAUG-CAGAGGGCGCuGG-CCgGCGCCg -3'
miRNA:   3'- -UACgGUCUCCCGCGcCUgGGgCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 157787 0.71 0.250017
Target:  5'- cUGCCccaGGAGaGGC-CGGACCCCGC-CUg -3'
miRNA:   3'- uACGG---UCUC-CCGcGCCUGGGGCGcGG- -5'
29147 5' -65.4 NC_006146.1 + 142398 0.71 0.250017
Target:  5'- cUGCCccaGGAGaGGC-CGGACCCCGC-CUg -3'
miRNA:   3'- uACGG---UCUC-CCGcGCCUGGGGCGcGG- -5'
29147 5' -65.4 NC_006146.1 + 148554 0.71 0.250017
Target:  5'- cUGCCccaGGAGaGGC-CGGACCCCGC-CUg -3'
miRNA:   3'- uACGG---UCUC-CCGcGCCUGGGGCGcGG- -5'
29147 5' -65.4 NC_006146.1 + 154709 0.71 0.250017
Target:  5'- cUGCCccaGGAGaGGC-CGGACCCCGC-CUg -3'
miRNA:   3'- uACGG---UCUC-CCGcGCCUGGGGCGcGG- -5'
29147 5' -65.4 NC_006146.1 + 145476 0.71 0.250017
Target:  5'- cUGCCccaGGAGaGGC-CGGACCCCGC-CUg -3'
miRNA:   3'- uACGG---UCUC-CCGcGCCUGGGGCGcGG- -5'
29147 5' -65.4 NC_006146.1 + 151632 0.71 0.250017
Target:  5'- cUGCCccaGGAGaGGC-CGGACCCCGC-CUg -3'
miRNA:   3'- uACGG---UCUC-CCGcGCCUGGGGCGcGG- -5'
29147 5' -65.4 NC_006146.1 + 122649 0.71 0.250017
Target:  5'- -cGCCAGgacGGcGGCGgGGGCCcuCCGCGCg -3'
miRNA:   3'- uaCGGUC---UC-CCGCgCCUGG--GGCGCGg -5'
29147 5' -65.4 NC_006146.1 + 284 0.71 0.250017
Target:  5'- -aGCCcgGGAagacccGGGgGCGGGCCCgGCGCg -3'
miRNA:   3'- uaCGG--UCU------CCCgCGCCUGGGgCGCGg -5'
29147 5' -65.4 NC_006146.1 + 71424 0.71 0.255127
Target:  5'- -cGUgGGaAGGGCGCGGccggcauuuuggcACCUgGCGCCg -3'
miRNA:   3'- uaCGgUC-UCCCGCGCC-------------UGGGgCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 125179 0.71 0.255701
Target:  5'- -gGCCAGgucAGGGuCGUGG-CCCCGCuGCUc -3'
miRNA:   3'- uaCGGUC---UCCC-GCGCCuGGGGCG-CGG- -5'
29147 5' -65.4 NC_006146.1 + 128194 0.71 0.255701
Target:  5'- -gGCCcaGGGGGGCGcCGcGGCgCCGgGCCa -3'
miRNA:   3'- uaCGG--UCUCCCGC-GC-CUGgGGCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 129111 0.71 0.255701
Target:  5'- -cGgCAGAGGGCcugagaGCGGGCgCCCGgGCg -3'
miRNA:   3'- uaCgGUCUCCCG------CGCCUG-GGGCgCGg -5'
29147 5' -65.4 NC_006146.1 + 34025 0.71 0.261489
Target:  5'- -cGCCGGAgcgGGGCaGCGGACCCagGgGCa -3'
miRNA:   3'- uaCGGUCU---CCCG-CGCCUGGGg-CgCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.