miRNA display CGI


Results 21 - 40 of 288 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29147 5' -65.4 NC_006146.1 + 150691 0.66 0.511857
Target:  5'- -gGCCAGGGGGaCGgaGGGCCUgGC-CUg -3'
miRNA:   3'- uaCGGUCUCCC-GCg-CCUGGGgCGcGG- -5'
29147 5' -65.4 NC_006146.1 + 47531 0.66 0.511857
Target:  5'- aGUGUCGG-GGGCGCcgccucGGuccuCCUCGCgGCCu -3'
miRNA:   3'- -UACGGUCuCCCGCG------CCu---GGGGCG-CGG- -5'
29147 5' -65.4 NC_006146.1 + 92319 0.66 0.511857
Target:  5'- cUGCU--GGGGgGCGGGCCCgGC-CUg -3'
miRNA:   3'- uACGGucUCCCgCGCCUGGGgCGcGG- -5'
29147 5' -65.4 NC_006146.1 + 126940 0.66 0.511857
Target:  5'- cUGgCAGGauggcgcucuccGGGCGCGucuggauaGACCCCGC-CCg -3'
miRNA:   3'- uACgGUCU------------CCCGCGC--------CUGGGGCGcGG- -5'
29147 5' -65.4 NC_006146.1 + 53175 0.66 0.511857
Target:  5'- -gGCCGGAaGGCuCGGccucgGCCCCG-GCCu -3'
miRNA:   3'- uaCGGUCUcCCGcGCC-----UGGGGCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 167864 0.66 0.511857
Target:  5'- -cGCuCAGAucGGCGCGGgggaGCCCCGgGgCg -3'
miRNA:   3'- uaCG-GUCUc-CCGCGCC----UGGGGCgCgG- -5'
29147 5' -65.4 NC_006146.1 + 33232 0.66 0.502756
Target:  5'- -aGCCGGGuGGCcgccgGCGGGuCCgCCGgGCCg -3'
miRNA:   3'- uaCGGUCUcCCG-----CGCCU-GG-GGCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 109193 0.66 0.502756
Target:  5'- -gGCCcagacAGAGGGCuggacuggcgGCGGuccccaaCCCGUGCCc -3'
miRNA:   3'- uaCGG-----UCUCCCG----------CGCCug-----GGGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 154675 0.66 0.502756
Target:  5'- gGUGgCGGGGGGCGCugcugcugGGuGgUCUGCGCCc -3'
miRNA:   3'- -UACgGUCUCCCGCG--------CC-UgGGGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 92696 0.66 0.502756
Target:  5'- -aGUCGGAGGGCaGUGacagcGACCCCucgugGCGUCc -3'
miRNA:   3'- uaCGGUCUCCCG-CGC-----CUGGGG-----CGCGG- -5'
29147 5' -65.4 NC_006146.1 + 137914 0.66 0.502756
Target:  5'- -gGCCGGggguuccgGGGGCaGcCGcGACCCagCGCGCCc -3'
miRNA:   3'- uaCGGUC--------UCCCG-C-GC-CUGGG--GCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 162581 0.66 0.50185
Target:  5'- -cGCCacGGAGGGuCGgGGGCCCUaacagcacagagaGCGaCCc -3'
miRNA:   3'- uaCGG--UCUCCC-GCgCCUGGGG-------------CGC-GG- -5'
29147 5' -65.4 NC_006146.1 + 170108 0.66 0.493726
Target:  5'- -cGCCgcagGGGGGGCcgGCGGGgcgUCCCGuCGUCa -3'
miRNA:   3'- uaCGG----UCUCCCG--CGCCU---GGGGC-GCGG- -5'
29147 5' -65.4 NC_006146.1 + 94026 0.66 0.493726
Target:  5'- -gGcCCGGcaGGGGCaCGG-CCCCgaGCGCCg -3'
miRNA:   3'- uaC-GGUC--UCCCGcGCCuGGGG--CGCGG- -5'
29147 5' -65.4 NC_006146.1 + 123227 0.66 0.493726
Target:  5'- -aGCUGGuacAGGGCGagguuGGGCCCCuGCGUg -3'
miRNA:   3'- uaCGGUC---UCCCGCg----CCUGGGG-CGCGg -5'
29147 5' -65.4 NC_006146.1 + 118232 0.66 0.492828
Target:  5'- gAUGUCcuggacgAGGGGGCGaggcuGGACgCCCucauGCGCCa -3'
miRNA:   3'- -UACGG-------UCUCCCGCg----CCUG-GGG----CGCGG- -5'
29147 5' -65.4 NC_006146.1 + 72202 0.66 0.491032
Target:  5'- -gGCCGGAuGGGCGgGaGACCagcggccccacccaCUGCGCg -3'
miRNA:   3'- uaCGGUCU-CCCGCgC-CUGG--------------GGCGCGg -5'
29147 5' -65.4 NC_006146.1 + 92020 0.66 0.484772
Target:  5'- cUGCUGGGGGGCGgGcccGGCCUgGgGCUg -3'
miRNA:   3'- uACGGUCUCCCGCgC---CUGGGgCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 92050 0.66 0.484772
Target:  5'- cUGCUGGGGGGCGgGcccGGCCUgGgGCUg -3'
miRNA:   3'- uACGGUCUCCCGCgC---CUGGGgCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 92109 0.66 0.484772
Target:  5'- cUGCUGGGGGGCGgGcccGGCCUgGgGCUg -3'
miRNA:   3'- uACGGUCUCCCGCgC---CUGGGgCgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.