Results 41 - 60 of 288 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29147 | 5' | -65.4 | NC_006146.1 | + | 139278 | 0.66 | 0.484772 |
Target: 5'- gGUGgCAGAGGGCcCGG-CCuuGaGCCc -3' miRNA: 3'- -UACgGUCUCCCGcGCCuGGggCgCGG- -5' |
|||||||
29147 | 5' | -65.4 | NC_006146.1 | + | 33141 | 0.66 | 0.484772 |
Target: 5'- cUGCCccgcuccggguGGGGGGUGgccCGGcugggcACCgCCGCGCCg -3' miRNA: 3'- uACGG-----------UCUCCCGC---GCC------UGG-GGCGCGG- -5' |
|||||||
29147 | 5' | -65.4 | NC_006146.1 | + | 92289 | 0.66 | 0.484772 |
Target: 5'- cUGCUGGGGGGCGgGcccGGCCUgGgGCUg -3' miRNA: 3'- uACGGUCUCCCGCgC---CUGGGgCgCGG- -5' |
|||||||
29147 | 5' | -65.4 | NC_006146.1 | + | 92259 | 0.66 | 0.484772 |
Target: 5'- cUGCUGGGGGGCGgGcccGGCCUgGgGCUg -3' miRNA: 3'- uACGGUCUCCCGCgC---CUGGGgCgCGG- -5' |
|||||||
29147 | 5' | -65.4 | NC_006146.1 | + | 92199 | 0.66 | 0.484772 |
Target: 5'- cUGCUGGGGGGCGgGcccGGCCUgGgGCUg -3' miRNA: 3'- uACGGUCUCCCGCgC---CUGGGgCgCGG- -5' |
|||||||
29147 | 5' | -65.4 | NC_006146.1 | + | 92109 | 0.66 | 0.484772 |
Target: 5'- cUGCUGGGGGGCGgGcccGGCCUgGgGCUg -3' miRNA: 3'- uACGGUCUCCCGCgC---CUGGGgCgCGG- -5' |
|||||||
29147 | 5' | -65.4 | NC_006146.1 | + | 92020 | 0.66 | 0.484772 |
Target: 5'- cUGCUGGGGGGCGgGcccGGCCUgGgGCUg -3' miRNA: 3'- uACGGUCUCCCGCgC---CUGGGgCgCGG- -5' |
|||||||
29147 | 5' | -65.4 | NC_006146.1 | + | 92050 | 0.66 | 0.484772 |
Target: 5'- cUGCUGGGGGGCGgGcccGGCCUgGgGCUg -3' miRNA: 3'- uACGGUCUCCCGCgC---CUGGGgCgCGG- -5' |
|||||||
29147 | 5' | -65.4 | NC_006146.1 | + | 92139 | 0.66 | 0.484772 |
Target: 5'- cUGCUGGGGGGCGgGcccGGCCUgGgGCUg -3' miRNA: 3'- uACGGUCUCCCGCgC---CUGGGgCgCGG- -5' |
|||||||
29147 | 5' | -65.4 | NC_006146.1 | + | 92169 | 0.66 | 0.484772 |
Target: 5'- cUGCUGGGGGGCGgGcccGGCCUgGgGCUg -3' miRNA: 3'- uACGGUCUCCCGCgC---CUGGGgCgCGG- -5' |
|||||||
29147 | 5' | -65.4 | NC_006146.1 | + | 148489 | 0.66 | 0.483881 |
Target: 5'- -gGCCAccuGGGUcaccacgGUGGACCCCgGgGCCa -3' miRNA: 3'- uaCGGUcu-CCCG-------CGCCUGGGG-CgCGG- -5' |
|||||||
29147 | 5' | -65.4 | NC_006146.1 | + | 3627 | 0.66 | 0.48299 |
Target: 5'- -cGCCGGccauccccacGCGCGG-CCCCGgGCCc -3' miRNA: 3'- uaCGGUCucc-------CGCGCCuGGGGCgCGG- -5' |
|||||||
29147 | 5' | -65.4 | NC_006146.1 | + | 2695 | 0.66 | 0.48299 |
Target: 5'- -cGCCGGccauccccacGCGCGG-CCCCGgGCCc -3' miRNA: 3'- uaCGGUCucc-------CGCGCCuGGGGCgCGG- -5' |
|||||||
29147 | 5' | -65.4 | NC_006146.1 | + | 1763 | 0.66 | 0.48299 |
Target: 5'- -cGCCGGccauccccacGCGCGG-CCCCGgGCCc -3' miRNA: 3'- uaCGGUCucc-------CGCGCCuGGGGCgCGG- -5' |
|||||||
29147 | 5' | -65.4 | NC_006146.1 | + | 831 | 0.66 | 0.48299 |
Target: 5'- -cGCCGGccauccccacGCGCGG-CCCCGgGCCc -3' miRNA: 3'- uaCGGUCucc-------CGCGCCuGGGGCgCGG- -5' |
|||||||
29147 | 5' | -65.4 | NC_006146.1 | + | 157837 | 0.66 | 0.475895 |
Target: 5'- -gGCCccGGAGGG-GaCGGGCaCCgaGCGCCg -3' miRNA: 3'- uaCGG--UCUCCCgC-GCCUG-GGg-CGCGG- -5' |
|||||||
29147 | 5' | -65.4 | NC_006146.1 | + | 169122 | 0.66 | 0.475895 |
Target: 5'- gAUGUCggGGAGGGCcCGGGgCCgCGCGUg -3' miRNA: 3'- -UACGG--UCUCCCGcGCCUgGG-GCGCGg -5' |
|||||||
29147 | 5' | -65.4 | NC_006146.1 | + | 168190 | 0.66 | 0.475895 |
Target: 5'- gAUGUCggGGAGGGCcCGGGgCCgCGCGUg -3' miRNA: 3'- -UACGG--UCUCCCGcGCCUgGG-GCGCGg -5' |
|||||||
29147 | 5' | -65.4 | NC_006146.1 | + | 167258 | 0.66 | 0.475895 |
Target: 5'- gAUGUCggGGAGGGCcCGGGgCCgCGCGUg -3' miRNA: 3'- -UACGG--UCUCCCGcGCCUgGG-GCGCGg -5' |
|||||||
29147 | 5' | -65.4 | NC_006146.1 | + | 77913 | 0.66 | 0.475895 |
Target: 5'- -gGCgCAG-GGGCGgGcGGCCUCGCagguGCCg -3' miRNA: 3'- uaCG-GUCuCCCGCgC-CUGGGGCG----CGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home