Results 41 - 60 of 288 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29147 | 5' | -65.4 | NC_006146.1 | + | 48627 | 0.73 | 0.1853 |
Target: 5'- gGUGCC-GuGGGgGCGGGCUCCGgGCg -3' miRNA: 3'- -UACGGuCuCCCgCGCCUGGGGCgCGg -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 57332 | 0.69 | 0.353897 |
Target: 5'- -gGCUcucuGGGGGCG-GGGCCCCGgGUg -3' miRNA: 3'- uaCGGu---CUCCCGCgCCUGGGGCgCGg -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 170201 | 0.68 | 0.408052 |
Target: 5'- -gGCCGGGGccuGGCGgGGGCCa-GCGCg -3' miRNA: 3'- uaCGGUCUC---CCGCgCCUGGggCGCGg -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 147106 | 0.68 | 0.408052 |
Target: 5'- -gGCgAGcuGGGGCucaGCGGGCCCCagacGCGCa -3' miRNA: 3'- uaCGgUC--UCCCG---CGCCUGGGG----CGCGg -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 131207 | 0.69 | 0.332292 |
Target: 5'- cUGCCuccGGAGcGGCGCugcaggcccaGGAgCCCGcCGCCu -3' miRNA: 3'- uACGG---UCUC-CCGCG----------CCUgGGGC-GCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 20003 | 0.71 | 0.267384 |
Target: 5'- -gGCCGGAGGGaccccgGCGG-CCCggUGUGCCa -3' miRNA: 3'- uaCGGUCUCCCg-----CGCCuGGG--GCGCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 67254 | 0.73 | 0.1853 |
Target: 5'- -gGCUGGGGGGauagGCGGGCCCCuccuccgcGUGCCa -3' miRNA: 3'- uaCGGUCUCCCg---CGCCUGGGG--------CGCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 44946 | 0.74 | 0.176765 |
Target: 5'- -gGCCAG-GGGCGCGGggagGCCCCGgGg- -3' miRNA: 3'- uaCGGUCuCCCGCGCC----UGGGGCgCgg -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 168425 | 0.71 | 0.273386 |
Target: 5'- uGUGCCuggcgggggAGAGGGgGCaGGGCUggcgccgggCCGCGCCc -3' miRNA: 3'- -UACGG---------UCUCCCgCG-CCUGG---------GGCGCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 53494 | 0.7 | 0.307667 |
Target: 5'- -gGCCGGGGGuGCggucuggcucuggcuGCGGGCCgCGCGUg -3' miRNA: 3'- uaCGGUCUCC-CG---------------CGCCUGGgGCGCGg -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 154887 | 0.7 | 0.305018 |
Target: 5'- -cGUCGGGGGGCa-GGGCCUCGC-CCg -3' miRNA: 3'- uaCGGUCUCCCGcgCCUGGGGCGcGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 52920 | 0.71 | 0.273386 |
Target: 5'- -gGCCccccGGGGGCGCuGGCCUCGUccGCCg -3' miRNA: 3'- uaCGGu---CUCCCGCGcCUGGGGCG--CGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 70874 | 0.72 | 0.213113 |
Target: 5'- -cGCgAGAaGcCGCGGACCCCGcCGCCu -3' miRNA: 3'- uaCGgUCUcCcGCGCCUGGGGC-GCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 48233 | 0.68 | 0.368841 |
Target: 5'- -cGCCuggguGAGcgccGCGCGGAgggcCCCCGcCGCCg -3' miRNA: 3'- uaCGGu----CUCc---CGCGCCU----GGGGC-GCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 170449 | 0.69 | 0.353897 |
Target: 5'- cGUGCCGGGGGaccCGgGGGCguguCCCGCGaCCc -3' miRNA: 3'- -UACGGUCUCCc--GCgCCUG----GGGCGC-GG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 97850 | 0.69 | 0.325309 |
Target: 5'- cUGgaGGAGGGgGCcgccGACCCCGgGCCg -3' miRNA: 3'- uACggUCUCCCgCGc---CUGGGGCgCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 33478 | 0.68 | 0.399204 |
Target: 5'- -gGUCGGgaagggaGGGGCGUGGuCCCCGgGaCCc -3' miRNA: 3'- uaCGGUC-------UCCCGCGCCuGGGGCgC-GG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 169176 | 0.66 | 0.530257 |
Target: 5'- -cGCCugcagGGGGGGCcgGCGGGgcgUCCCGuCGUCa -3' miRNA: 3'- uaCGG-----UCUCCCG--CGCCU---GGGGC-GCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 170680 | 0.68 | 0.408052 |
Target: 5'- -gGCCAG-GGGCGCcccggGGACCgUCGCGg- -3' miRNA: 3'- uaCGGUCuCCCGCG-----CCUGG-GGCGCgg -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 59724 | 0.68 | 0.388907 |
Target: 5'- -gGUCGGGGGGCGCaucucucgccuCCCCgaGCGCCu -3' miRNA: 3'- uaCGGUCUCCCGCGccu--------GGGG--CGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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