miRNA display CGI


Results 41 - 60 of 288 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29147 5' -65.4 NC_006146.1 + 48627 0.73 0.1853
Target:  5'- gGUGCC-GuGGGgGCGGGCUCCGgGCg -3'
miRNA:   3'- -UACGGuCuCCCgCGCCUGGGGCgCGg -5'
29147 5' -65.4 NC_006146.1 + 57332 0.69 0.353897
Target:  5'- -gGCUcucuGGGGGCG-GGGCCCCGgGUg -3'
miRNA:   3'- uaCGGu---CUCCCGCgCCUGGGGCgCGg -5'
29147 5' -65.4 NC_006146.1 + 170201 0.68 0.408052
Target:  5'- -gGCCGGGGccuGGCGgGGGCCa-GCGCg -3'
miRNA:   3'- uaCGGUCUC---CCGCgCCUGGggCGCGg -5'
29147 5' -65.4 NC_006146.1 + 147106 0.68 0.408052
Target:  5'- -gGCgAGcuGGGGCucaGCGGGCCCCagacGCGCa -3'
miRNA:   3'- uaCGgUC--UCCCG---CGCCUGGGG----CGCGg -5'
29147 5' -65.4 NC_006146.1 + 131207 0.69 0.332292
Target:  5'- cUGCCuccGGAGcGGCGCugcaggcccaGGAgCCCGcCGCCu -3'
miRNA:   3'- uACGG---UCUC-CCGCG----------CCUgGGGC-GCGG- -5'
29147 5' -65.4 NC_006146.1 + 20003 0.71 0.267384
Target:  5'- -gGCCGGAGGGaccccgGCGG-CCCggUGUGCCa -3'
miRNA:   3'- uaCGGUCUCCCg-----CGCCuGGG--GCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 67254 0.73 0.1853
Target:  5'- -gGCUGGGGGGauagGCGGGCCCCuccuccgcGUGCCa -3'
miRNA:   3'- uaCGGUCUCCCg---CGCCUGGGG--------CGCGG- -5'
29147 5' -65.4 NC_006146.1 + 44946 0.74 0.176765
Target:  5'- -gGCCAG-GGGCGCGGggagGCCCCGgGg- -3'
miRNA:   3'- uaCGGUCuCCCGCGCC----UGGGGCgCgg -5'
29147 5' -65.4 NC_006146.1 + 168425 0.71 0.273386
Target:  5'- uGUGCCuggcgggggAGAGGGgGCaGGGCUggcgccgggCCGCGCCc -3'
miRNA:   3'- -UACGG---------UCUCCCgCG-CCUGG---------GGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 53494 0.7 0.307667
Target:  5'- -gGCCGGGGGuGCggucuggcucuggcuGCGGGCCgCGCGUg -3'
miRNA:   3'- uaCGGUCUCC-CG---------------CGCCUGGgGCGCGg -5'
29147 5' -65.4 NC_006146.1 + 154887 0.7 0.305018
Target:  5'- -cGUCGGGGGGCa-GGGCCUCGC-CCg -3'
miRNA:   3'- uaCGGUCUCCCGcgCCUGGGGCGcGG- -5'
29147 5' -65.4 NC_006146.1 + 52920 0.71 0.273386
Target:  5'- -gGCCccccGGGGGCGCuGGCCUCGUccGCCg -3'
miRNA:   3'- uaCGGu---CUCCCGCGcCUGGGGCG--CGG- -5'
29147 5' -65.4 NC_006146.1 + 70874 0.72 0.213113
Target:  5'- -cGCgAGAaGcCGCGGACCCCGcCGCCu -3'
miRNA:   3'- uaCGgUCUcCcGCGCCUGGGGC-GCGG- -5'
29147 5' -65.4 NC_006146.1 + 48233 0.68 0.368841
Target:  5'- -cGCCuggguGAGcgccGCGCGGAgggcCCCCGcCGCCg -3'
miRNA:   3'- uaCGGu----CUCc---CGCGCCU----GGGGC-GCGG- -5'
29147 5' -65.4 NC_006146.1 + 170449 0.69 0.353897
Target:  5'- cGUGCCGGGGGaccCGgGGGCguguCCCGCGaCCc -3'
miRNA:   3'- -UACGGUCUCCc--GCgCCUG----GGGCGC-GG- -5'
29147 5' -65.4 NC_006146.1 + 97850 0.69 0.325309
Target:  5'- cUGgaGGAGGGgGCcgccGACCCCGgGCCg -3'
miRNA:   3'- uACggUCUCCCgCGc---CUGGGGCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 33478 0.68 0.399204
Target:  5'- -gGUCGGgaagggaGGGGCGUGGuCCCCGgGaCCc -3'
miRNA:   3'- uaCGGUC-------UCCCGCGCCuGGGGCgC-GG- -5'
29147 5' -65.4 NC_006146.1 + 169176 0.66 0.530257
Target:  5'- -cGCCugcagGGGGGGCcgGCGGGgcgUCCCGuCGUCa -3'
miRNA:   3'- uaCGG-----UCUCCCG--CGCCU---GGGGC-GCGG- -5'
29147 5' -65.4 NC_006146.1 + 170680 0.68 0.408052
Target:  5'- -gGCCAG-GGGCGCcccggGGACCgUCGCGg- -3'
miRNA:   3'- uaCGGUCuCCCGCG-----CCUGG-GGCGCgg -5'
29147 5' -65.4 NC_006146.1 + 59724 0.68 0.388907
Target:  5'- -gGUCGGGGGGCGCaucucucgccuCCCCgaGCGCCu -3'
miRNA:   3'- uaCGGUCUCCCGCGccu--------GGGG--CGCGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.