miRNA display CGI


Results 1 - 20 of 288 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29147 5' -65.4 NC_006146.1 + 20003 0.71 0.267384
Target:  5'- -gGCCGGAGGGaccccgGCGG-CCCggUGUGCCa -3'
miRNA:   3'- uaCGGUCUCCCg-----CGCCuGGG--GCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 161435 1.08 0.000577
Target:  5'- gAUGCCAGAGGGCGCGGACCCCGCGCCc -3'
miRNA:   3'- -UACGGUCUCCCGCGCCUGGGGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 120027 0.74 0.160739
Target:  5'- -gGCCAGuccGGGCaCaGACCCCGCGCg -3'
miRNA:   3'- uaCGGUCu--CCCGcGcCUGGGGCGCGg -5'
29147 5' -65.4 NC_006146.1 + 70874 0.72 0.213113
Target:  5'- -cGCgAGAaGcCGCGGACCCCGcCGCCu -3'
miRNA:   3'- uaCGgUCUcCcGCGCCUGGGGC-GCGG- -5'
29147 5' -65.4 NC_006146.1 + 121143 0.72 0.213113
Target:  5'- -aGCCGGcgucuGGGCcUGGGCCgCGCGCCc -3'
miRNA:   3'- uaCGGUCu----CCCGcGCCUGGgGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 34187 0.74 0.172222
Target:  5'- -aGCCGGAcccuGGUGCcaggcagGGACCUCGCGCCg -3'
miRNA:   3'- uaCGGUCUc---CCGCG-------CCUGGGGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 48627 0.73 0.1853
Target:  5'- gGUGCC-GuGGGgGCGGGCUCCGgGCg -3'
miRNA:   3'- -UACGGuCuCCCgCGCCUGGGGCgCGg -5'
29147 5' -65.4 NC_006146.1 + 97401 0.73 0.203464
Target:  5'- -aGCCu----GCGCGuGACCCCGCGCCu -3'
miRNA:   3'- uaCGGucuccCGCGC-CUGGGGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 16926 0.71 0.267384
Target:  5'- -gGCCGGAGGGaccccgGCGG-CCCggUGUGCCa -3'
miRNA:   3'- uaCGGUCUCCCg-----CGCCuGGG--GCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 29237 0.71 0.267384
Target:  5'- -gGCCGGAGGGaccccgGCGG-CCCggUGUGCCa -3'
miRNA:   3'- uaCGGUCUCCCg-----CGCCuGGG--GCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 169176 0.66 0.530257
Target:  5'- -cGCCugcagGGGGGGCcgGCGGGgcgUCCCGuCGUCa -3'
miRNA:   3'- uaCGG-----UCUCCCG--CGCCU---GGGGC-GCGG- -5'
29147 5' -65.4 NC_006146.1 + 44946 0.74 0.176765
Target:  5'- -gGCCAG-GGGCGCGGggagGCCCCGgGg- -3'
miRNA:   3'- uaCGGUCuCCCGCGCC----UGGGGCgCgg -5'
29147 5' -65.4 NC_006146.1 + 138017 0.74 0.172222
Target:  5'- -aGCCGGAcccuGGUGCcaggcagGGACCUCGCGCCg -3'
miRNA:   3'- uaCGGUCUc---CCGCG-------CCUGGGGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 128194 0.71 0.255701
Target:  5'- -gGCCcaGGGGGGCGcCGcGGCgCCGgGCCa -3'
miRNA:   3'- uaCGG--UCUCCCGC-GC-CUGgGGCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 13848 0.71 0.267384
Target:  5'- -gGCCGGAGGGaccccgGCGG-CCCggUGUGCCa -3'
miRNA:   3'- uaCGGUCUCCCg-----CGCCuGGG--GCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 67254 0.73 0.1853
Target:  5'- -gGCUGGGGGGauagGCGGGCCCCuccuccgcGUGCCa -3'
miRNA:   3'- uaCGGUCUCCCg---CGCCUGGGG--------CGCGG- -5'
29147 5' -65.4 NC_006146.1 + 26159 0.71 0.267384
Target:  5'- -gGCCGGAGGGaccccgGCGG-CCCggUGUGCCa -3'
miRNA:   3'- uaCGGUCUCCCg-----CGCCuGGG--GCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 52920 0.71 0.273386
Target:  5'- -gGCCccccGGGGGCGCuGGCCUCGUccGCCg -3'
miRNA:   3'- uaCGGu---CUCCCGCGcCUGGGGCG--CGG- -5'
29147 5' -65.4 NC_006146.1 + 57384 0.73 0.1853
Target:  5'- -cGCCGGuGGGC-UGG-CCCCGCGaCCg -3'
miRNA:   3'- uaCGGUCuCCCGcGCCuGGGGCGC-GG- -5'
29147 5' -65.4 NC_006146.1 + 129111 0.71 0.255701
Target:  5'- -cGgCAGAGGGCcugagaGCGGGCgCCCGgGCg -3'
miRNA:   3'- uaCgGUCUCCCG------CGCCUG-GGGCgCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.