miRNA display CGI


Results 1 - 20 of 288 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29147 5' -65.4 NC_006146.1 + 170680 0.68 0.408052
Target:  5'- -gGCCAG-GGGCGCcccggGGACCgUCGCGg- -3'
miRNA:   3'- uaCGGUCuCCCGCG-----CCUGG-GGCGCgg -5'
29147 5' -65.4 NC_006146.1 + 170532 0.67 0.467101
Target:  5'- -gGCCugAGGGGGCGCGGcgauuguCgCCGC-CCu -3'
miRNA:   3'- uaCGG--UCUCCCGCGCCu------GgGGCGcGG- -5'
29147 5' -65.4 NC_006146.1 + 170488 0.67 0.449768
Target:  5'- -gGCgagCGGGGGGCuucccCGGACCCCcaGCGCg -3'
miRNA:   3'- uaCG---GUCUCCCGc----GCCUGGGG--CGCGg -5'
29147 5' -65.4 NC_006146.1 + 170449 0.69 0.353897
Target:  5'- cGUGCCGGGGGaccCGgGGGCguguCCCGCGaCCc -3'
miRNA:   3'- -UACGGUCUCCc--GCgCCUG----GGGCGC-GG- -5'
29147 5' -65.4 NC_006146.1 + 170288 0.71 0.273386
Target:  5'- uGUGCCuggcgggggAGAGGGgGCaGGGCUggcgccgggCCGCGCCc -3'
miRNA:   3'- -UACGG---------UCUCCCgCG-CCUGG---------GGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 170201 0.68 0.408052
Target:  5'- -gGCCGGGGccuGGCGgGGGCCa-GCGCg -3'
miRNA:   3'- uaCGGUCUC---CCGCgCCUGGggCGCGg -5'
29147 5' -65.4 NC_006146.1 + 170108 0.66 0.493726
Target:  5'- -cGCCgcagGGGGGGCcgGCGGGgcgUCCCGuCGUCa -3'
miRNA:   3'- uaCGG----UCUCCCG--CGCCU---GGGGC-GCGG- -5'
29147 5' -65.4 NC_006146.1 + 170054 0.66 0.475895
Target:  5'- gAUGUCggGGAGGGCcCGGGgCCgCGCGUg -3'
miRNA:   3'- -UACGG--UCUCCCGcGCCUgGG-GCGCGg -5'
29147 5' -65.4 NC_006146.1 + 169728 0.66 0.511857
Target:  5'- -cGCuCAGAucGGCGCGGgggaGCCCCGgGgCg -3'
miRNA:   3'- uaCG-GUCUc-CCGCGCC----UGGGGCgCgG- -5'
29147 5' -65.4 NC_006146.1 + 169601 0.67 0.467101
Target:  5'- -gGCCugAGGGGGCGCGGcgauuguCgCCGC-CCu -3'
miRNA:   3'- uaCGG--UCUCCCGCGCCu------GgGGCGcGG- -5'
29147 5' -65.4 NC_006146.1 + 169518 0.69 0.353897
Target:  5'- cGUGCCGGGGGaccCGgGGGCguguCCCGCGaCCc -3'
miRNA:   3'- -UACGGUCUCCc--GCgCCUG----GGGCGC-GG- -5'
29147 5' -65.4 NC_006146.1 + 169357 0.71 0.273386
Target:  5'- uGUGCCuggcgggggAGAGGGgGCaGGGCUggcgccgggCCGCGCCc -3'
miRNA:   3'- -UACGG---------UCUCCCgCG-CCUGG---------GGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 169270 0.68 0.408052
Target:  5'- -gGCCGGGGccuGGCGgGGGCCa-GCGCg -3'
miRNA:   3'- uaCGGUCUC---CCGCgCCUGGggCGCGg -5'
29147 5' -65.4 NC_006146.1 + 169176 0.66 0.530257
Target:  5'- -cGCCugcagGGGGGGCcgGCGGGgcgUCCCGuCGUCa -3'
miRNA:   3'- uaCGG-----UCUCCCG--CGCCU---GGGGC-GCGG- -5'
29147 5' -65.4 NC_006146.1 + 169122 0.66 0.475895
Target:  5'- gAUGUCggGGAGGGCcCGGGgCCgCGCGUg -3'
miRNA:   3'- -UACGG--UCUCCCGcGCCUgGG-GCGCGg -5'
29147 5' -65.4 NC_006146.1 + 168838 0.69 0.361315
Target:  5'- aAUGCCGacGAGGGCcaacucuCGGGCCCUcucuugGCGCUg -3'
miRNA:   3'- -UACGGU--CUCCCGc------GCCUGGGG------CGCGG- -5'
29147 5' -65.4 NC_006146.1 + 168796 0.66 0.511857
Target:  5'- -cGCuCAGAucGGCGCGGgggaGCCCCGgGgCg -3'
miRNA:   3'- uaCG-GUCUc-CCGCGCC----UGGGGCgCgG- -5'
29147 5' -65.4 NC_006146.1 + 168668 0.67 0.467101
Target:  5'- -gGCCugAGGGGGCGCGGcgauuguCgCCGC-CCu -3'
miRNA:   3'- uaCGG--UCUCCCGCGCCu------GgGGCGcGG- -5'
29147 5' -65.4 NC_006146.1 + 168586 0.69 0.353897
Target:  5'- cGUGCCGGGGGaccCGgGGGCguguCCCGCGaCCc -3'
miRNA:   3'- -UACGGUCUCCc--GCgCCUG----GGGCGC-GG- -5'
29147 5' -65.4 NC_006146.1 + 168425 0.71 0.273386
Target:  5'- uGUGCCuggcgggggAGAGGGgGCaGGGCUggcgccgggCCGCGCCc -3'
miRNA:   3'- -UACGG---------UCUCCCgCG-CCUGG---------GGCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.