miRNA display CGI


Results 61 - 80 of 288 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29147 5' -65.4 NC_006146.1 + 92259 0.66 0.484772
Target:  5'- cUGCUGGGGGGCGgGcccGGCCUgGgGCUg -3'
miRNA:   3'- uACGGUCUCCCGCgC---CUGGGgCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 92199 0.66 0.484772
Target:  5'- cUGCUGGGGGGCGgGcccGGCCUgGgGCUg -3'
miRNA:   3'- uACGGUCUCCCGCgC---CUGGGgCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 77913 0.66 0.475895
Target:  5'- -gGCgCAG-GGGCGgGcGGCCUCGCagguGCCg -3'
miRNA:   3'- uaCG-GUCuCCCGCgC-CUGGGGCG----CGG- -5'
29147 5' -65.4 NC_006146.1 + 39671 0.67 0.467101
Target:  5'- -gGCCuuGGAGGcG-GCGGGCuCCUGgGCCu -3'
miRNA:   3'- uaCGG--UCUCC-CgCGCCUG-GGGCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 139366 0.67 0.461864
Target:  5'- -cGCCGGGGGGgGUgccugcuguuuaguaGGagaagGCCCCcacgGCGCCg -3'
miRNA:   3'- uaCGGUCUCCCgCG---------------CC-----UGGGG----CGCGG- -5'
29147 5' -65.4 NC_006146.1 + 57221 0.67 0.458391
Target:  5'- -gGCCGGAggccGGGCcCGGGCCCga-GCCa -3'
miRNA:   3'- uaCGGUCU----CCCGcGCCUGGGgcgCGG- -5'
29147 5' -65.4 NC_006146.1 + 14559 0.67 0.458391
Target:  5'- cUGCUGGgccgcuuucGGGGCGUgagccccaucccGGA-CCCGCGCCu -3'
miRNA:   3'- uACGGUC---------UCCCGCG------------CCUgGGGCGCGG- -5'
29147 5' -65.4 NC_006146.1 + 114758 0.67 0.449768
Target:  5'- -gGCCgcggGGAGGGCucucggucuCGGGgCCCGCgGCCa -3'
miRNA:   3'- uaCGG----UCUCCCGc--------GCCUgGGGCG-CGG- -5'
29147 5' -65.4 NC_006146.1 + 35748 0.67 0.441235
Target:  5'- --uCCAGGaccGGGCaGCGGACCCgGCagcgGCCc -3'
miRNA:   3'- uacGGUCU---CCCG-CGCCUGGGgCG----CGG- -5'
29147 5' -65.4 NC_006146.1 + 35655 0.67 0.441235
Target:  5'- --uCCAGGaccGGGCaGCGGACCCgGCagcgGCCc -3'
miRNA:   3'- uacGGUCU---CCCG-CGCCUGGGgCG----CGG- -5'
29147 5' -65.4 NC_006146.1 + 117028 0.66 0.475895
Target:  5'- -cGCCcuaacGGGGGCGCugaGGGCCagCGuCGCCu -3'
miRNA:   3'- uaCGGu----CUCCCGCG---CCUGGg-GC-GCGG- -5'
29147 5' -65.4 NC_006146.1 + 831 0.66 0.48299
Target:  5'- -cGCCGGccauccccacGCGCGG-CCCCGgGCCc -3'
miRNA:   3'- uaCGGUCucc-------CGCGCCuGGGGCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 92169 0.66 0.484772
Target:  5'- cUGCUGGGGGGCGgGcccGGCCUgGgGCUg -3'
miRNA:   3'- uACGGUCUCCCGCgC---CUGGGgCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 92139 0.66 0.484772
Target:  5'- cUGCUGGGGGGCGgGcccGGCCUgGgGCUg -3'
miRNA:   3'- uACGGUCUCCCGCgC---CUGGGgCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 92109 0.66 0.484772
Target:  5'- cUGCUGGGGGGCGgGcccGGCCUgGgGCUg -3'
miRNA:   3'- uACGGUCUCCCGCgC---CUGGGgCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 92050 0.66 0.484772
Target:  5'- cUGCUGGGGGGCGgGcccGGCCUgGgGCUg -3'
miRNA:   3'- uACGGUCUCCCGCgC---CUGGGgCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 92020 0.66 0.484772
Target:  5'- cUGCUGGGGGGCGgGcccGGCCUgGgGCUg -3'
miRNA:   3'- uACGGUCUCCCGCgC---CUGGGgCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 3627 0.66 0.48299
Target:  5'- -cGCCGGccauccccacGCGCGG-CCCCGgGCCc -3'
miRNA:   3'- uaCGGUCucc-------CGCGCCuGGGGCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 2695 0.66 0.48299
Target:  5'- -cGCCGGccauccccacGCGCGG-CCCCGgGCCc -3'
miRNA:   3'- uaCGGUCucc-------CGCGCCuGGGGCgCGG- -5'
29147 5' -65.4 NC_006146.1 + 1763 0.66 0.48299
Target:  5'- -cGCCGGccauccccacGCGCGG-CCCCGgGCCc -3'
miRNA:   3'- uaCGGUCucc-------CGCGCCuGGGGCgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.