Results 41 - 60 of 288 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29147 | 5' | -65.4 | NC_006146.1 | + | 34025 | 0.71 | 0.261489 |
Target: 5'- -cGCCGGAgcgGGGCaGCGGACCCagGgGCa -3' miRNA: 3'- uaCGGUCU---CCCG-CGCCUGGGg-CgCGg -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 33932 | 0.71 | 0.261489 |
Target: 5'- -cGCCGGAgcgGGGCaGCGGACCCagGgGCa -3' miRNA: 3'- uaCGGUCU---CCCG-CGCCUGGGg-CgCGg -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 57920 | 0.71 | 0.244439 |
Target: 5'- cAUG-CAGAGGGCGCuGG-CCgGCGCCg -3' miRNA: 3'- -UACgGUCUCCCGCGcCUgGGgCGCGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 34118 | 0.71 | 0.261489 |
Target: 5'- -cGCCGGAgcgGGGCaGCGGACCCagGgGCa -3' miRNA: 3'- uaCGGUCU---CCCG-CGCCUGGGg-CgCGg -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 34211 | 0.71 | 0.261489 |
Target: 5'- -cGCCGGAgcgGGGCaGCGGACCCagGgGCa -3' miRNA: 3'- uaCGGUCU---CCCG-CGCCUGGGg-CgCGg -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 154709 | 0.71 | 0.250017 |
Target: 5'- cUGCCccaGGAGaGGC-CGGACCCCGC-CUg -3' miRNA: 3'- uACGG---UCUC-CCGcGCCUGGGGCGcGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 34490 | 0.71 | 0.261489 |
Target: 5'- -cGCCGGAgcgGGGCaGCGGACCCagGgGCa -3' miRNA: 3'- uaCGGUCU---CCCG-CGCCUGGGg-CgCGg -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 34676 | 0.71 | 0.261489 |
Target: 5'- -cGCCGGAgcgGGGCaGCGGACCCagGgGCa -3' miRNA: 3'- uaCGGUCU---CCCG-CGCCUGGGg-CgCGg -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 142398 | 0.71 | 0.250017 |
Target: 5'- cUGCCccaGGAGaGGC-CGGACCCCGC-CUg -3' miRNA: 3'- uACGG---UCUC-CCGcGCCUGGGGCGcGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 148554 | 0.71 | 0.250017 |
Target: 5'- cUGCCccaGGAGaGGC-CGGACCCCGC-CUg -3' miRNA: 3'- uACGG---UCUC-CCGcGCCUGGGGCGcGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 34583 | 0.71 | 0.261489 |
Target: 5'- -cGCCGGAgcgGGGCaGCGGACCCagGgGCa -3' miRNA: 3'- uaCGGUCU---CCCG-CGCCUGGGg-CgCGg -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 34397 | 0.71 | 0.261489 |
Target: 5'- -cGCCGGAgcgGGGCaGCGGACCCagGgGCa -3' miRNA: 3'- uaCGGUCU---CCCG-CGCCUGGGg-CgCGg -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 33654 | 0.71 | 0.261489 |
Target: 5'- -cGCCGGAgcgGGGCaGCGGACCCagGgGCa -3' miRNA: 3'- uaCGGUCU---CCCG-CGCCUGGGg-CgCGg -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 33840 | 0.71 | 0.261489 |
Target: 5'- -cGCCGGAgcgGGGCaGCGGACCCagGgGCa -3' miRNA: 3'- uaCGGUCU---CCCG-CGCCUGGGg-CgCGg -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 34304 | 0.71 | 0.261489 |
Target: 5'- -cGCCGGAgcgGGGCaGCGGACCCagGgGCa -3' miRNA: 3'- uaCGGUCU---CCCG-CGCCUGGGg-CgCGg -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 33468 | 0.71 | 0.261489 |
Target: 5'- -cGCCGGAgcgGGGCaGCGGACCCagGgGCa -3' miRNA: 3'- uaCGGUCU---CCCG-CGCCUGGGg-CgCGg -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 157787 | 0.71 | 0.250017 |
Target: 5'- cUGCCccaGGAGaGGC-CGGACCCCGC-CUg -3' miRNA: 3'- uACGG---UCUC-CCGcGCCUGGGGCGcGG- -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 33375 | 0.71 | 0.261489 |
Target: 5'- -cGCCGGAgcgGGGCaGCGGACCCagGgGCa -3' miRNA: 3'- uaCGGUCU---CCCG-CGCCUGGGg-CgCGg -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 122649 | 0.71 | 0.250017 |
Target: 5'- -cGCCAGgacGGcGGCGgGGGCCcuCCGCGCg -3' miRNA: 3'- uaCGGUC---UC-CCGCgCCUGG--GGCGCGg -5' |
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29147 | 5' | -65.4 | NC_006146.1 | + | 145476 | 0.71 | 0.250017 |
Target: 5'- cUGCCccaGGAGaGGC-CGGACCCCGC-CUg -3' miRNA: 3'- uACGG---UCUC-CCGcGCCUGGGGCGcGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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