Results 1 - 20 of 205 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29148 | 3' | -57.8 | NC_006146.1 | + | 54016 | 0.66 | 0.893044 |
Target: 5'- gCCCUGGAGcAGGCAcugcuGCGCCUggccgggccggaUGUGGu -3' miRNA: 3'- aGGGGCUUUcUCCGU-----UGCGGG------------GCACC- -5' |
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29148 | 3' | -57.8 | NC_006146.1 | + | 17804 | 0.66 | 0.893044 |
Target: 5'- gCUCCGAGAGcauGuGCuacucGCGCCCCcUGGu -3' miRNA: 3'- aGGGGCUUUCu--C-CGu----UGCGGGGcACC- -5' |
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29148 | 3' | -57.8 | NC_006146.1 | + | 3369 | 0.66 | 0.893044 |
Target: 5'- cUCCCagGAGAGGGGCcgggGGCGCggCCCGg-- -3' miRNA: 3'- -AGGGg-CUUUCUCCG----UUGCG--GGGCacc -5' |
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29148 | 3' | -57.8 | NC_006146.1 | + | 2437 | 0.66 | 0.893044 |
Target: 5'- cUCCCagGAGAGGGGCcgggGGCGCggCCCGg-- -3' miRNA: 3'- -AGGGg-CUUUCUCCG----UUGCG--GGGCacc -5' |
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29148 | 3' | -57.8 | NC_006146.1 | + | 1505 | 0.66 | 0.893044 |
Target: 5'- cUCCCagGAGAGGGGCcgggGGCGCggCCCGg-- -3' miRNA: 3'- -AGGGg-CUUUCUCCG----UUGCG--GGGCacc -5' |
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29148 | 3' | -57.8 | NC_006146.1 | + | 574 | 0.66 | 0.893044 |
Target: 5'- cUCCCagGAGAGGGGCcgggGGCGCggCCCGg-- -3' miRNA: 3'- -AGGGg-CUUUCUCCG----UUGCG--GGGCacc -5' |
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29148 | 3' | -57.8 | NC_006146.1 | + | 53729 | 0.66 | 0.893044 |
Target: 5'- cUCUCCGGGAGccGCGGCuGCgCCG-GGg -3' miRNA: 3'- -AGGGGCUUUCucCGUUG-CGgGGCaCC- -5' |
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29148 | 3' | -57.8 | NC_006146.1 | + | 56669 | 0.66 | 0.892398 |
Target: 5'- cUCCCUGAGGugccgggcccccuGGGGCug-GCCCUGcUGGa -3' miRNA: 3'- -AGGGGCUUU-------------CUCCGuugCGGGGC-ACC- -5' |
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29148 | 3' | -57.8 | NC_006146.1 | + | 127404 | 0.66 | 0.886482 |
Target: 5'- -gCCCGGAcccuacugGGAaaucuguacGGCAACGUCCaccaGUGGg -3' miRNA: 3'- agGGGCUU--------UCU---------CCGUUGCGGGg---CACC- -5' |
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29148 | 3' | -57.8 | NC_006146.1 | + | 62170 | 0.66 | 0.886482 |
Target: 5'- aCUCCG-AGGAGGCGgacaccagcACGCCCaCGg-- -3' miRNA: 3'- aGGGGCuUUCUCCGU---------UGCGGG-GCacc -5' |
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29148 | 3' | -57.8 | NC_006146.1 | + | 33486 | 0.66 | 0.886482 |
Target: 5'- ----aGGGAGGGGCGugGuCCCCG-GGa -3' miRNA: 3'- aggggCUUUCUCCGUugC-GGGGCaCC- -5' |
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29148 | 3' | -57.8 | NC_006146.1 | + | 149447 | 0.66 | 0.886482 |
Target: 5'- --gCCGAGAGcuugcGGCucaGCUCCGUGGa -3' miRNA: 3'- aggGGCUUUCu----CCGuugCGGGGCACC- -5' |
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29148 | 3' | -57.8 | NC_006146.1 | + | 44418 | 0.66 | 0.886482 |
Target: 5'- uUCCUCGAGGGGcucccggggucuGGCAcccgugccauaGCcUCCCGUGGa -3' miRNA: 3'- -AGGGGCUUUCU------------CCGU-----------UGcGGGGCACC- -5' |
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29148 | 3' | -57.8 | NC_006146.1 | + | 159914 | 0.66 | 0.882443 |
Target: 5'- cCCCCGucaccGGCAGCGCCgCCugcuuuaggugcacuGUGGc -3' miRNA: 3'- aGGGGCuuucuCCGUUGCGG-GG---------------CACC- -5' |
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29148 | 3' | -57.8 | NC_006146.1 | + | 67943 | 0.66 | 0.879708 |
Target: 5'- gUCCCGGAu-GGGCGGCuGCCCuCGgagGGc -3' miRNA: 3'- aGGGGCUUucUCCGUUG-CGGG-GCa--CC- -5' |
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29148 | 3' | -57.8 | NC_006146.1 | + | 136767 | 0.66 | 0.879708 |
Target: 5'- gCUCCGGGAGGcccGGCcGCGauccucCCCCGUGa -3' miRNA: 3'- aGGGGCUUUCU---CCGuUGC------GGGGCACc -5' |
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29148 | 3' | -57.8 | NC_006146.1 | + | 113115 | 0.66 | 0.879708 |
Target: 5'- cUCCCCGggGGAuGCcAUGUcuuccgCCgGUGGg -3' miRNA: 3'- -AGGGGCuuUCUcCGuUGCG------GGgCACC- -5' |
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29148 | 3' | -57.8 | NC_006146.1 | + | 136858 | 0.66 | 0.879708 |
Target: 5'- cCCCCGGcc--GGCAuAgGCCCCG-GGa -3' miRNA: 3'- aGGGGCUuucuCCGU-UgCGGGGCaCC- -5' |
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29148 | 3' | -57.8 | NC_006146.1 | + | 113806 | 0.66 | 0.879708 |
Target: 5'- cUCCCCGcuGGccAGGacGCGCCgCuCGUGGa -3' miRNA: 3'- -AGGGGCuuUC--UCCguUGCGG-G-GCACC- -5' |
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29148 | 3' | -57.8 | NC_006146.1 | + | 119329 | 0.66 | 0.879708 |
Target: 5'- cCCCCGGGccccucccGGCGGCGCCCag-GGu -3' miRNA: 3'- aGGGGCUUucu-----CCGUUGCGGGgcaCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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