miRNA display CGI


Results 1 - 20 of 205 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29148 3' -57.8 NC_006146.1 + 17804 0.66 0.893044
Target:  5'- gCUCCGAGAGcauGuGCuacucGCGCCCCcUGGu -3'
miRNA:   3'- aGGGGCUUUCu--C-CGu----UGCGGGGcACC- -5'
29148 3' -57.8 NC_006146.1 + 3369 0.66 0.893044
Target:  5'- cUCCCagGAGAGGGGCcgggGGCGCggCCCGg-- -3'
miRNA:   3'- -AGGGg-CUUUCUCCG----UUGCG--GGGCacc -5'
29148 3' -57.8 NC_006146.1 + 2437 0.66 0.893044
Target:  5'- cUCCCagGAGAGGGGCcgggGGCGCggCCCGg-- -3'
miRNA:   3'- -AGGGg-CUUUCUCCG----UUGCG--GGGCacc -5'
29148 3' -57.8 NC_006146.1 + 1505 0.66 0.893044
Target:  5'- cUCCCagGAGAGGGGCcgggGGCGCggCCCGg-- -3'
miRNA:   3'- -AGGGg-CUUUCUCCG----UUGCG--GGGCacc -5'
29148 3' -57.8 NC_006146.1 + 574 0.66 0.893044
Target:  5'- cUCCCagGAGAGGGGCcgggGGCGCggCCCGg-- -3'
miRNA:   3'- -AGGGg-CUUUCUCCG----UUGCG--GGGCacc -5'
29148 3' -57.8 NC_006146.1 + 54016 0.66 0.893044
Target:  5'- gCCCUGGAGcAGGCAcugcuGCGCCUggccgggccggaUGUGGu -3'
miRNA:   3'- aGGGGCUUUcUCCGU-----UGCGGG------------GCACC- -5'
29148 3' -57.8 NC_006146.1 + 53729 0.66 0.893044
Target:  5'- cUCUCCGGGAGccGCGGCuGCgCCG-GGg -3'
miRNA:   3'- -AGGGGCUUUCucCGUUG-CGgGGCaCC- -5'
29148 3' -57.8 NC_006146.1 + 56669 0.66 0.892398
Target:  5'- cUCCCUGAGGugccgggcccccuGGGGCug-GCCCUGcUGGa -3'
miRNA:   3'- -AGGGGCUUU-------------CUCCGuugCGGGGC-ACC- -5'
29148 3' -57.8 NC_006146.1 + 127404 0.66 0.886482
Target:  5'- -gCCCGGAcccuacugGGAaaucuguacGGCAACGUCCaccaGUGGg -3'
miRNA:   3'- agGGGCUU--------UCU---------CCGUUGCGGGg---CACC- -5'
29148 3' -57.8 NC_006146.1 + 44418 0.66 0.886482
Target:  5'- uUCCUCGAGGGGcucccggggucuGGCAcccgugccauaGCcUCCCGUGGa -3'
miRNA:   3'- -AGGGGCUUUCU------------CCGU-----------UGcGGGGCACC- -5'
29148 3' -57.8 NC_006146.1 + 33486 0.66 0.886482
Target:  5'- ----aGGGAGGGGCGugGuCCCCG-GGa -3'
miRNA:   3'- aggggCUUUCUCCGUugC-GGGGCaCC- -5'
29148 3' -57.8 NC_006146.1 + 149447 0.66 0.886482
Target:  5'- --gCCGAGAGcuugcGGCucaGCUCCGUGGa -3'
miRNA:   3'- aggGGCUUUCu----CCGuugCGGGGCACC- -5'
29148 3' -57.8 NC_006146.1 + 62170 0.66 0.886482
Target:  5'- aCUCCG-AGGAGGCGgacaccagcACGCCCaCGg-- -3'
miRNA:   3'- aGGGGCuUUCUCCGU---------UGCGGG-GCacc -5'
29148 3' -57.8 NC_006146.1 + 159914 0.66 0.882443
Target:  5'- cCCCCGucaccGGCAGCGCCgCCugcuuuaggugcacuGUGGc -3'
miRNA:   3'- aGGGGCuuucuCCGUUGCGG-GG---------------CACC- -5'
29148 3' -57.8 NC_006146.1 + 113806 0.66 0.879708
Target:  5'- cUCCCCGcuGGccAGGacGCGCCgCuCGUGGa -3'
miRNA:   3'- -AGGGGCuuUC--UCCguUGCGG-G-GCACC- -5'
29148 3' -57.8 NC_006146.1 + 119329 0.66 0.879708
Target:  5'- cCCCCGGGccccucccGGCGGCGCCCag-GGu -3'
miRNA:   3'- aGGGGCUUucu-----CCGUUGCGGGgcaCC- -5'
29148 3' -57.8 NC_006146.1 + 136767 0.66 0.879708
Target:  5'- gCUCCGGGAGGcccGGCcGCGauccucCCCCGUGa -3'
miRNA:   3'- aGGGGCUUUCU---CCGuUGC------GGGGCACc -5'
29148 3' -57.8 NC_006146.1 + 67943 0.66 0.879708
Target:  5'- gUCCCGGAu-GGGCGGCuGCCCuCGgagGGc -3'
miRNA:   3'- aGGGGCUUucUCCGUUG-CGGG-GCa--CC- -5'
29148 3' -57.8 NC_006146.1 + 113115 0.66 0.879708
Target:  5'- cUCCCCGggGGAuGCcAUGUcuuccgCCgGUGGg -3'
miRNA:   3'- -AGGGGCuuUCUcCGuUGCG------GGgCACC- -5'
29148 3' -57.8 NC_006146.1 + 117762 0.66 0.879708
Target:  5'- gUCCCGccacaGAGGAGGCAaccgucGCGCuCCCccGGg -3'
miRNA:   3'- aGGGGC-----UUUCUCCGU------UGCG-GGGcaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.