Results 41 - 60 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29148 | 5' | -59 | NC_006146.1 | + | 114759 | 0.66 | 0.820971 |
Target: 5'- -gCCGCGG-GGA-GGGCUCUCggucucGGGGc -3' miRNA: 3'- gaGGUGCCaCCUaUCCGAGGGa-----CCCU- -5' |
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29148 | 5' | -59 | NC_006146.1 | + | 137230 | 0.66 | 0.820971 |
Target: 5'- -gCCG-GGUGGGggccUGGGgUCCCgGGGAc -3' miRNA: 3'- gaGGUgCCACCU----AUCCgAGGGaCCCU- -5' |
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29148 | 5' | -59 | NC_006146.1 | + | 40360 | 0.66 | 0.820971 |
Target: 5'- aUCUGCGGcGGAgaAGGCcCCCUGGu- -3' miRNA: 3'- gAGGUGCCaCCUa-UCCGaGGGACCcu -5' |
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29148 | 5' | -59 | NC_006146.1 | + | 102387 | 0.66 | 0.820971 |
Target: 5'- gUCCuCGG-GGAgcuGGUgguaucugUCCCUGGGGc -3' miRNA: 3'- gAGGuGCCaCCUau-CCG--------AGGGACCCU- -5' |
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29148 | 5' | -59 | NC_006146.1 | + | 126620 | 0.66 | 0.820971 |
Target: 5'- uUUgGCGGUGGucgGUGGGCacaCCCcGGGGc -3' miRNA: 3'- gAGgUGCCACC---UAUCCGa--GGGaCCCU- -5' |
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29148 | 5' | -59 | NC_006146.1 | + | 123475 | 0.66 | 0.786397 |
Target: 5'- aCUCCAUGGacggcaUGGAggagcugAGGCUggCCCUGGc- -3' miRNA: 3'- -GAGGUGCC------ACCUa------UCCGA--GGGACCcu -5' |
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29148 | 5' | -59 | NC_006146.1 | + | 137189 | 0.67 | 0.730767 |
Target: 5'- gCUCCagaACGG-GGGUAGGCcgggcacacCCCgGGGAg -3' miRNA: 3'- -GAGG---UGCCaCCUAUCCGa--------GGGaCCCU- -5' |
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29148 | 5' | -59 | NC_006146.1 | + | 137002 | 0.67 | 0.730767 |
Target: 5'- gCUCCaggACGG-GGGUAGGCcgggcacacCCCgGGGAg -3' miRNA: 3'- -GAGG---UGCCaCCUAUCCGa--------GGGaCCCU- -5' |
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29148 | 5' | -59 | NC_006146.1 | + | 91693 | 0.71 | 0.551411 |
Target: 5'- aCUCUACGGUGGcaucgguuuuGGCUCgUUUGGGAg -3' miRNA: 3'- -GAGGUGCCACCuau-------CCGAG-GGACCCU- -5' |
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29148 | 5' | -59 | NC_006146.1 | + | 55654 | 0.7 | 0.602614 |
Target: 5'- --gCACGGUgaaucccuGGGccucucagcUGGGCUCCCUGGGu -3' miRNA: 3'- gagGUGCCA--------CCU---------AUCCGAGGGACCCu -5' |
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29148 | 5' | -59 | NC_006146.1 | + | 8886 | 0.7 | 0.612552 |
Target: 5'- aCUCCACcGUGGAgccGGuCUCCCaGGGu -3' miRNA: 3'- -GAGGUGcCACCUau-CC-GAGGGaCCCu -5' |
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29148 | 5' | -59 | NC_006146.1 | + | 31611 | 0.69 | 0.642423 |
Target: 5'- -aCCACGGgGGAUGGGCUCaaggCC-GGGc -3' miRNA: 3'- gaGGUGCCaCCUAUCCGAG----GGaCCCu -5' |
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29148 | 5' | -59 | NC_006146.1 | + | 41297 | 0.69 | 0.652375 |
Target: 5'- gCUCCACGGUGaGGggcagGGGCUUuuUcagaGGGAg -3' miRNA: 3'- -GAGGUGCCAC-CUa----UCCGAGggA----CCCU- -5' |
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29148 | 5' | -59 | NC_006146.1 | + | 165794 | 0.69 | 0.659332 |
Target: 5'- -gCCACGGUGGcacggccggcuagggGGGCgUCCCUGGc- -3' miRNA: 3'- gaGGUGCCACCua-------------UCCG-AGGGACCcu -5' |
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29148 | 5' | -59 | NC_006146.1 | + | 144978 | 0.68 | 0.672224 |
Target: 5'- cCUCCugGGcgucucugggucUGGAcuggAGGg-CCCUGGGAg -3' miRNA: 3'- -GAGGugCC------------ACCUa---UCCgaGGGACCCU- -5' |
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29148 | 5' | -59 | NC_006146.1 | + | 148056 | 0.68 | 0.672224 |
Target: 5'- cCUCCugGGcgucucugggucUGGAcuggAGGg-CCCUGGGAg -3' miRNA: 3'- -GAGGugCC------------ACCUa---UCCgaGGGACCCU- -5' |
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29148 | 5' | -59 | NC_006146.1 | + | 151134 | 0.68 | 0.672224 |
Target: 5'- cCUCCugGGcgucucugggucUGGAcuggAGGg-CCCUGGGAg -3' miRNA: 3'- -GAGGugCC------------ACCUa---UCCgaGGGACCCU- -5' |
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29148 | 5' | -59 | NC_006146.1 | + | 154212 | 0.68 | 0.672224 |
Target: 5'- cCUCCugGGcgucucugggucUGGAcuggAGGg-CCCUGGGAg -3' miRNA: 3'- -GAGGugCC------------ACCUa---UCCgaGGGACCCU- -5' |
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29148 | 5' | -59 | NC_006146.1 | + | 157290 | 0.68 | 0.672224 |
Target: 5'- cCUCCugGGcgucucugggucUGGAcuggAGGg-CCCUGGGAg -3' miRNA: 3'- -GAGGugCC------------ACCUa---UCCgaGGGACCCU- -5' |
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29148 | 5' | -59 | NC_006146.1 | + | 47875 | 0.68 | 0.69195 |
Target: 5'- uUCCAaggccGUGGAcGGGUUCCUUGGGc -3' miRNA: 3'- gAGGUgc---CACCUaUCCGAGGGACCCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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