miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29148 5' -59 NC_006146.1 + 170368 0.68 0.721163
Target:  5'- -cCCGCGGagaggccgugugUGGAggccGGGCcucCCCUGGGGg -3'
miRNA:   3'- gaGGUGCC------------ACCUa---UCCGa--GGGACCCU- -5'
29148 5' -59 NC_006146.1 + 169437 0.68 0.721163
Target:  5'- -cCCGCGGagaggccgugugUGGAggccGGGCcucCCCUGGGGg -3'
miRNA:   3'- gaGGUGCC------------ACCUa---UCCGa--GGGACCCU- -5'
29148 5' -59 NC_006146.1 + 168505 0.68 0.721163
Target:  5'- -cCCGCGGagaggccgugugUGGAggccGGGCcucCCCUGGGGg -3'
miRNA:   3'- gaGGUGCC------------ACCUa---UCCGa--GGGACCCU- -5'
29148 5' -59 NC_006146.1 + 167573 0.68 0.721163
Target:  5'- -cCCGCGGagaggccgugugUGGAggccGGGCcucCCCUGGGGg -3'
miRNA:   3'- gaGGUGCC------------ACCUa---UCCGa--GGGACCCU- -5'
29148 5' -59 NC_006146.1 + 165794 0.69 0.659332
Target:  5'- -gCCACGGUGGcacggccggcuagggGGGCgUCCCUGGc- -3'
miRNA:   3'- gaGGUGCCACCua-------------UCCG-AGGGACCcu -5'
29148 5' -59 NC_006146.1 + 162027 0.77 0.233253
Target:  5'- gCUCCACGGUGGAguGGCaCUgUGGGAa -3'
miRNA:   3'- -GAGGUGCCACCUauCCGaGGgACCCU- -5'
29148 5' -59 NC_006146.1 + 161995 0.99 0.008492
Target:  5'- gCUCCACGGUGGAUAGGCaCCCUGGGAg -3'
miRNA:   3'- -GAGGUGCCACCUAUCCGaGGGACCCU- -5'
29148 5' -59 NC_006146.1 + 161928 0.99 0.008492
Target:  5'- gCUCCACGGUGGAUAGGCaCCCUGGGAg -3'
miRNA:   3'- -GAGGUGCCACCUAUCCGaGGGACCCU- -5'
29148 5' -59 NC_006146.1 + 161861 1.08 0.001871
Target:  5'- gCUCCACGGUGGAUAGGCUCCCUGGGAg -3'
miRNA:   3'- -GAGGUGCCACCUAUCCGAGGGACCCU- -5'
29148 5' -59 NC_006146.1 + 161794 1.08 0.001871
Target:  5'- gCUCCACGGUGGAUAGGCUCCCUGGGAg -3'
miRNA:   3'- -GAGGUGCCACCUAUCCGAGGGACCCU- -5'
29148 5' -59 NC_006146.1 + 157290 0.68 0.672224
Target:  5'- cCUCCugGGcgucucugggucUGGAcuggAGGg-CCCUGGGAg -3'
miRNA:   3'- -GAGGugCC------------ACCUa---UCCgaGGGACCCU- -5'
29148 5' -59 NC_006146.1 + 154212 0.68 0.672224
Target:  5'- cCUCCugGGcgucucugggucUGGAcuggAGGg-CCCUGGGAg -3'
miRNA:   3'- -GAGGugCC------------ACCUa---UCCgaGGGACCCU- -5'
29148 5' -59 NC_006146.1 + 151134 0.68 0.672224
Target:  5'- cCUCCugGGcgucucugggucUGGAcuggAGGg-CCCUGGGAg -3'
miRNA:   3'- -GAGGugCC------------ACCUa---UCCgaGGGACCCU- -5'
29148 5' -59 NC_006146.1 + 148056 0.68 0.672224
Target:  5'- cCUCCugGGcgucucugggucUGGAcuggAGGg-CCCUGGGAg -3'
miRNA:   3'- -GAGGugCC------------ACCUa---UCCgaGGGACCCU- -5'
29148 5' -59 NC_006146.1 + 144978 0.68 0.672224
Target:  5'- cCUCCugGGcgucucugggucUGGAcuggAGGg-CCCUGGGAg -3'
miRNA:   3'- -GAGGugCC------------ACCUa---UCCgaGGGACCCU- -5'
29148 5' -59 NC_006146.1 + 141900 0.68 0.672224
Target:  5'- cCUCCugGGcgucucugggucUGGAcuggAGGg-CCCUGGGAg -3'
miRNA:   3'- -GAGGugCC------------ACCUa---UCCgaGGGACCCU- -5'
29148 5' -59 NC_006146.1 + 141162 0.66 0.832482
Target:  5'- -gCUGCGGUGGuu-GGUUCCCUcuuuauguagacaccGGGGc -3'
miRNA:   3'- gaGGUGCCACCuauCCGAGGGA---------------CCCU- -5'
29148 5' -59 NC_006146.1 + 137954 0.66 0.811702
Target:  5'- gUUCACGGgggaGGAUcgcggccGGGcCUCCCgGGGGc -3'
miRNA:   3'- gAGGUGCCa---CCUA-------UCC-GAGGGaCCCU- -5'
29148 5' -59 NC_006146.1 + 137852 0.67 0.749725
Target:  5'- -cUCGgGGUGGGUGGGCgugUCCC-GGGc -3'
miRNA:   3'- gaGGUgCCACCUAUCCG---AGGGaCCCu -5'
29148 5' -59 NC_006146.1 + 137230 0.66 0.820971
Target:  5'- -gCCG-GGUGGGggccUGGGgUCCCgGGGAc -3'
miRNA:   3'- gaGGUgCCACCU----AUCCgAGGGaCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.