Results 1 - 20 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29148 | 5' | -59 | NC_006146.1 | + | 151134 | 0.68 | 0.672224 |
Target: 5'- cCUCCugGGcgucucugggucUGGAcuggAGGg-CCCUGGGAg -3' miRNA: 3'- -GAGGugCC------------ACCUa---UCCgaGGGACCCU- -5' |
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29148 | 5' | -59 | NC_006146.1 | + | 8985 | 0.66 | 0.795258 |
Target: 5'- aUCCACcGUGGAgccGGuCUCCCacGGGGc -3' miRNA: 3'- gAGGUGcCACCUau-CC-GAGGGa-CCCU- -5' |
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29148 | 5' | -59 | NC_006146.1 | + | 8919 | 0.66 | 0.795258 |
Target: 5'- aUCCACcGUGGAgccGGuCUCCCacGGGGc -3' miRNA: 3'- gAGGUGcCACCUau-CC-GAGGGa-CCCU- -5' |
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29148 | 5' | -59 | NC_006146.1 | + | 123475 | 0.66 | 0.786397 |
Target: 5'- aCUCCAUGGacggcaUGGAggagcugAGGCUggCCCUGGc- -3' miRNA: 3'- -GAGGUGCC------ACCUa------UCCGA--GGGACCcu -5' |
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29148 | 5' | -59 | NC_006146.1 | + | 137189 | 0.67 | 0.730767 |
Target: 5'- gCUCCagaACGG-GGGUAGGCcgggcacacCCCgGGGAg -3' miRNA: 3'- -GAGG---UGCCaCCUAUCCGa--------GGGaCCCU- -5' |
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29148 | 5' | -59 | NC_006146.1 | + | 137002 | 0.67 | 0.730767 |
Target: 5'- gCUCCaggACGG-GGGUAGGCcgggcacacCCCgGGGAg -3' miRNA: 3'- -GAGG---UGCCaCCUAUCCGa--------GGGaCCCU- -5' |
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29148 | 5' | -59 | NC_006146.1 | + | 47875 | 0.68 | 0.69195 |
Target: 5'- uUCCAaggccGUGGAcGGGUUCCUUGGGc -3' miRNA: 3'- gAGGUgc---CACCUaUCCGAGGGACCCu -5' |
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29148 | 5' | -59 | NC_006146.1 | + | 157290 | 0.68 | 0.672224 |
Target: 5'- cCUCCugGGcgucucugggucUGGAcuggAGGg-CCCUGGGAg -3' miRNA: 3'- -GAGGugCC------------ACCUa---UCCgaGGGACCCU- -5' |
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29148 | 5' | -59 | NC_006146.1 | + | 154212 | 0.68 | 0.672224 |
Target: 5'- cCUCCugGGcgucucugggucUGGAcuggAGGg-CCCUGGGAg -3' miRNA: 3'- -GAGGugCC------------ACCUa---UCCgaGGGACCCU- -5' |
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29148 | 5' | -59 | NC_006146.1 | + | 9052 | 0.66 | 0.795258 |
Target: 5'- aUCCACcGUGGAgccGGuCUCCCacGGGGc -3' miRNA: 3'- gAGGUGcCACCUau-CC-GAGGGa-CCCU- -5' |
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29148 | 5' | -59 | NC_006146.1 | + | 9119 | 0.66 | 0.795258 |
Target: 5'- aUCCACcGUGGAgccGGuCUCCCacGGGGc -3' miRNA: 3'- gAGGUGcCACCUau-CC-GAGGGa-CCCU- -5' |
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29148 | 5' | -59 | NC_006146.1 | + | 91755 | 0.66 | 0.812552 |
Target: 5'- uCUCCG-GGUucuuGGGUGGGUg-CCUGGGGu -3' miRNA: 3'- -GAGGUgCCA----CCUAUCCGagGGACCCU- -5' |
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29148 | 5' | -59 | NC_006146.1 | + | 126620 | 0.66 | 0.820971 |
Target: 5'- uUUgGCGGUGGucgGUGGGCacaCCCcGGGGc -3' miRNA: 3'- gAGgUGCCACC---UAUCCGa--GGGaCCCU- -5' |
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29148 | 5' | -59 | NC_006146.1 | + | 102387 | 0.66 | 0.820971 |
Target: 5'- gUCCuCGG-GGAgcuGGUgguaucugUCCCUGGGGc -3' miRNA: 3'- gAGGuGCCaCCUau-CCG--------AGGGACCCU- -5' |
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29148 | 5' | -59 | NC_006146.1 | + | 40360 | 0.66 | 0.820971 |
Target: 5'- aUCUGCGGcGGAgaAGGCcCCCUGGu- -3' miRNA: 3'- gAGGUGCCaCCUa-UCCGaGGGACCcu -5' |
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29148 | 5' | -59 | NC_006146.1 | + | 137230 | 0.66 | 0.820971 |
Target: 5'- -gCCG-GGUGGGggccUGGGgUCCCgGGGAc -3' miRNA: 3'- gaGGUgCCACCU----AUCCgAGGGaCCCU- -5' |
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29148 | 5' | -59 | NC_006146.1 | + | 114759 | 0.66 | 0.820971 |
Target: 5'- -gCCGCGG-GGA-GGGCUCUCggucucGGGGc -3' miRNA: 3'- gaGGUGCCaCCUaUCCGAGGGa-----CCCU- -5' |
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29148 | 5' | -59 | NC_006146.1 | + | 23489 | 0.66 | 0.820971 |
Target: 5'- --gUACGGgcuGGUGGGCUCgCuCUGGGAg -3' miRNA: 3'- gagGUGCCac-CUAUCCGAG-G-GACCCU- -5' |
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29148 | 5' | -59 | NC_006146.1 | + | 104216 | 0.66 | 0.820971 |
Target: 5'- uCUgCACGG-GGAagcUGGGCUUCC-GGGu -3' miRNA: 3'- -GAgGUGCCaCCU---AUCCGAGGGaCCCu -5' |
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29148 | 5' | -59 | NC_006146.1 | + | 56668 | 0.66 | 0.812552 |
Target: 5'- cCUCCcugaGGUGcc-GGGCcCCCUGGGGc -3' miRNA: 3'- -GAGGug--CCACcuaUCCGaGGGACCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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