miRNA display CGI


Results 21 - 40 of 61 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29148 5' -59 NC_006146.1 + 9119 0.66 0.795258
Target:  5'- aUCCACcGUGGAgccGGuCUCCCacGGGGc -3'
miRNA:   3'- gAGGUGcCACCUau-CC-GAGGGa-CCCU- -5'
29148 5' -59 NC_006146.1 + 123475 0.66 0.786397
Target:  5'- aCUCCAUGGacggcaUGGAggagcugAGGCUggCCCUGGc- -3'
miRNA:   3'- -GAGGUGCC------ACCUa------UCCGA--GGGACCcu -5'
29148 5' -59 NC_006146.1 + 137852 0.67 0.749725
Target:  5'- -cUCGgGGUGGGUGGGCgugUCCC-GGGc -3'
miRNA:   3'- gaGGUgCCACCUAUCCG---AGGGaCCCu -5'
29148 5' -59 NC_006146.1 + 90226 0.67 0.740291
Target:  5'- ---gGCGGUGGAggAGGCagCCgaGGGAg -3'
miRNA:   3'- gaggUGCCACCUa-UCCGa-GGgaCCCU- -5'
29148 5' -59 NC_006146.1 + 126031 0.67 0.730767
Target:  5'- gCUgCugGGccgGGAgggacUGGGCUCCCUuGGGu -3'
miRNA:   3'- -GAgGugCCa--CCU-----AUCCGAGGGA-CCCu -5'
29148 5' -59 NC_006146.1 + 137189 0.67 0.730767
Target:  5'- gCUCCagaACGG-GGGUAGGCcgggcacacCCCgGGGAg -3'
miRNA:   3'- -GAGG---UGCCaCCUAUCCGa--------GGGaCCCU- -5'
29148 5' -59 NC_006146.1 + 137002 0.67 0.730767
Target:  5'- gCUCCaggACGG-GGGUAGGCcgggcacacCCCgGGGAg -3'
miRNA:   3'- -GAGG---UGCCaCCUAUCCGa--------GGGaCCCU- -5'
29148 5' -59 NC_006146.1 + 169437 0.68 0.721163
Target:  5'- -cCCGCGGagaggccgugugUGGAggccGGGCcucCCCUGGGGg -3'
miRNA:   3'- gaGGUGCC------------ACCUa---UCCGa--GGGACCCU- -5'
29148 5' -59 NC_006146.1 + 168505 0.68 0.721163
Target:  5'- -cCCGCGGagaggccgugugUGGAggccGGGCcucCCCUGGGGg -3'
miRNA:   3'- gaGGUGCC------------ACCUa---UCCGa--GGGACCCU- -5'
29148 5' -59 NC_006146.1 + 33740 0.68 0.721163
Target:  5'- cCUCCGgucCGGUGGGUGuGG-UCCgCUGGGu -3'
miRNA:   3'- -GAGGU---GCCACCUAU-CCgAGG-GACCCu -5'
29148 5' -59 NC_006146.1 + 167573 0.68 0.721163
Target:  5'- -cCCGCGGagaggccgugugUGGAggccGGGCcucCCCUGGGGg -3'
miRNA:   3'- gaGGUGCC------------ACCUa---UCCGa--GGGACCCU- -5'
29148 5' -59 NC_006146.1 + 170368 0.68 0.721163
Target:  5'- -cCCGCGGagaggccgugugUGGAggccGGGCcucCCCUGGGGg -3'
miRNA:   3'- gaGGUGCC------------ACCUa---UCCGa--GGGACCCU- -5'
29148 5' -59 NC_006146.1 + 102986 0.68 0.701746
Target:  5'- aCUCCACGGUGGGccGGGCUa--UGGa- -3'
miRNA:   3'- -GAGGUGCCACCUa-UCCGAgggACCcu -5'
29148 5' -59 NC_006146.1 + 122765 0.68 0.701746
Target:  5'- aUCUugGGgaucUGGcgGGGCUCCCcGGcGAc -3'
miRNA:   3'- gAGGugCC----ACCuaUCCGAGGGaCC-CU- -5'
29148 5' -59 NC_006146.1 + 47875 0.68 0.69195
Target:  5'- uUCCAaggccGUGGAcGGGUUCCUUGGGc -3'
miRNA:   3'- gAGGUgc---CACCUaUCCGAGGGACCCu -5'
29148 5' -59 NC_006146.1 + 157290 0.68 0.672224
Target:  5'- cCUCCugGGcgucucugggucUGGAcuggAGGg-CCCUGGGAg -3'
miRNA:   3'- -GAGGugCC------------ACCUa---UCCgaGGGACCCU- -5'
29148 5' -59 NC_006146.1 + 154212 0.68 0.672224
Target:  5'- cCUCCugGGcgucucugggucUGGAcuggAGGg-CCCUGGGAg -3'
miRNA:   3'- -GAGGugCC------------ACCUa---UCCgaGGGACCCU- -5'
29148 5' -59 NC_006146.1 + 148056 0.68 0.672224
Target:  5'- cCUCCugGGcgucucugggucUGGAcuggAGGg-CCCUGGGAg -3'
miRNA:   3'- -GAGGugCC------------ACCUa---UCCgaGGGACCCU- -5'
29148 5' -59 NC_006146.1 + 144978 0.68 0.672224
Target:  5'- cCUCCugGGcgucucugggucUGGAcuggAGGg-CCCUGGGAg -3'
miRNA:   3'- -GAGGugCC------------ACCUa---UCCgaGGGACCCU- -5'
29148 5' -59 NC_006146.1 + 141900 0.68 0.672224
Target:  5'- cCUCCugGGcgucucugggucUGGAcuggAGGg-CCCUGGGAg -3'
miRNA:   3'- -GAGGugCC------------ACCUa---UCCgaGGGACCCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.