Results 1 - 20 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29149 | 5' | -59.5 | NC_006146.1 | + | 170095 | 0.66 | 0.787373 |
Target: 5'- -cGGGAGggGCCGGCgCCGCaGGgGGGg- -3' miRNA: 3'- caCCCUC--UGGCCGaGGUG-CCaCCUau -5' |
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29149 | 5' | -59.5 | NC_006146.1 | + | 170060 | 0.68 | 0.662946 |
Target: 5'- -gGGGAGGgcCCGGggCCGCGcGUGGGg- -3' miRNA: 3'- caCCCUCU--GGCCgaGGUGC-CACCUau -5' |
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29149 | 5' | -59.5 | NC_006146.1 | + | 169977 | 0.68 | 0.632997 |
Target: 5'- -cGGGAGGCCGGCgcgcgCC-CGGggucccgGGGg- -3' miRNA: 3'- caCCCUCUGGCCGa----GGuGCCa------CCUau -5' |
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29149 | 5' | -59.5 | NC_006146.1 | + | 169411 | 0.67 | 0.692681 |
Target: 5'- ---cGAGGCCGGCUgCCAUGGUcaGGAg- -3' miRNA: 3'- caccCUCUGGCCGA-GGUGCCA--CCUau -5' |
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29149 | 5' | -59.5 | NC_006146.1 | + | 169128 | 0.68 | 0.662946 |
Target: 5'- -gGGGAGGgcCCGGggCCGCGcGUGGGg- -3' miRNA: 3'- caCCCUCU--GGCCgaGGUGC-CACCUau -5' |
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29149 | 5' | -59.5 | NC_006146.1 | + | 169045 | 0.68 | 0.632997 |
Target: 5'- -cGGGAGGCCGGCgcgcgCC-CGGggucccgGGGg- -3' miRNA: 3'- caCCCUCUGGCCGa----GGuGCCa------CCUau -5' |
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29149 | 5' | -59.5 | NC_006146.1 | + | 168196 | 0.68 | 0.662946 |
Target: 5'- -gGGGAGGgcCCGGggCCGCGcGUGGGg- -3' miRNA: 3'- caCCCUCU--GGCCgaGGUGC-CACCUau -5' |
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29149 | 5' | -59.5 | NC_006146.1 | + | 168113 | 0.68 | 0.632997 |
Target: 5'- -cGGGAGGCCGGCgcgcgCC-CGGggucccgGGGg- -3' miRNA: 3'- caCCCUCUGGCCGa----GGuGCCa------CCUau -5' |
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29149 | 5' | -59.5 | NC_006146.1 | + | 167264 | 0.68 | 0.662946 |
Target: 5'- -gGGGAGGgcCCGGggCCGCGcGUGGGg- -3' miRNA: 3'- caCCCUCU--GGCCgaGGUGC-CACCUau -5' |
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29149 | 5' | -59.5 | NC_006146.1 | + | 167181 | 0.68 | 0.632997 |
Target: 5'- -cGGGAGGCCGGCgcgcgCC-CGGggucccgGGGg- -3' miRNA: 3'- caCCCUCUGGCCGa----GGuGCCa------CCUau -5' |
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29149 | 5' | -59.5 | NC_006146.1 | + | 162126 | 0.75 | 0.280383 |
Target: 5'- cUGGGGGGCCGuC-CCACGGUGGGa- -3' miRNA: 3'- cACCCUCUGGCcGaGGUGCCACCUau -5' |
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29149 | 5' | -59.5 | NC_006146.1 | + | 162047 | 0.79 | 0.173945 |
Target: 5'- uGUGGGAaACCGGUUCCACcgcgggGGUGGGUGa -3' miRNA: 3'- -CACCCUcUGGCCGAGGUG------CCACCUAU- -5' |
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29149 | 5' | -59.5 | NC_006146.1 | + | 162016 | 1 | 0.00621 |
Target: 5'- cUGGGAGACCGGCUCCACGGUGGAg- -3' miRNA: 3'- cACCCUCUGGCCGAGGUGCCACCUau -5' |
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29149 | 5' | -59.5 | NC_006146.1 | + | 161983 | 1.07 | 0.002099 |
Target: 5'- cGUGGGAGACCGGCUCCACGGUGGAUAg -3' miRNA: 3'- -CACCCUCUGGCCGAGGUGCCACCUAU- -5' |
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29149 | 5' | -59.5 | NC_006146.1 | + | 161916 | 1.07 | 0.002099 |
Target: 5'- cGUGGGAGACCGGCUCCACGGUGGAUAg -3' miRNA: 3'- -CACCCUCUGGCCGAGGUGCCACCUAU- -5' |
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29149 | 5' | -59.5 | NC_006146.1 | + | 161849 | 1.07 | 0.002099 |
Target: 5'- cGUGGGAGACCGGCUCCACGGUGGAUAg -3' miRNA: 3'- -CACCCUCUGGCCGAGGUGCCACCUAU- -5' |
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29149 | 5' | -59.5 | NC_006146.1 | + | 161782 | 1.07 | 0.002099 |
Target: 5'- cGUGGGAGACCGGCUCCACGGUGGAUAg -3' miRNA: 3'- -CACCCUCUGGCCGAGGUGCCACCUAU- -5' |
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29149 | 5' | -59.5 | NC_006146.1 | + | 161717 | 0.7 | 0.524518 |
Target: 5'- cUGGGAGAa-GGCUUgGgGGUGGGUGg -3' miRNA: 3'- cACCCUCUggCCGAGgUgCCACCUAU- -5' |
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29149 | 5' | -59.5 | NC_006146.1 | + | 160017 | 0.66 | 0.781983 |
Target: 5'- -aGGGccuuGAcguugaugcugaagcCCGGCUCCACGGUGa--- -3' miRNA: 3'- caCCCu---CU---------------GGCCGAGGUGCCACcuau -5' |
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29149 | 5' | -59.5 | NC_006146.1 | + | 157740 | 0.67 | 0.712277 |
Target: 5'- -cGGGcAGGCCGGgUCUugGGccugGGAg- -3' miRNA: 3'- caCCC-UCUGGCCgAGGugCCa---CCUau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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