miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29149 5' -59.5 NC_006146.1 + 4200 0.68 0.672892
Target:  5'- -cGGGA-ACCGGCUUCaugACGGUGGu-- -3'
miRNA:   3'- caCCCUcUGGCCGAGG---UGCCACCuau -5'
29149 5' -59.5 NC_006146.1 + 26261 0.68 0.662946
Target:  5'- gGUGGGGGcACgGGUggcggaauuagCCugGGUGGAg- -3'
miRNA:   3'- -CACCCUC-UGgCCGa----------GGugCCACCUau -5'
29149 5' -59.5 NC_006146.1 + 36109 0.73 0.366104
Target:  5'- -aGGGGGACCcGCUgCugGGUGGGg- -3'
miRNA:   3'- caCCCUCUGGcCGAgGugCCACCUau -5'
29149 5' -59.5 NC_006146.1 + 43601 0.66 0.75062
Target:  5'- -cGGGAGGCCGGgUCgGguCGGgGGAa- -3'
miRNA:   3'- caCCCUCUGGCCgAGgU--GCCaCCUau -5'
29149 5' -59.5 NC_006146.1 + 45349 0.68 0.652977
Target:  5'- -gGGGAGGCCGGUaCCcaACGGgaGGAg- -3'
miRNA:   3'- caCCCUCUGGCCGaGG--UGCCa-CCUau -5'
29149 5' -59.5 NC_006146.1 + 45666 0.67 0.692681
Target:  5'- -aGGGAGACCGuCUCCGCcagGGAg- -3'
miRNA:   3'- caCCCUCUGGCcGAGGUGccaCCUau -5'
29149 5' -59.5 NC_006146.1 + 47744 0.66 0.778364
Target:  5'- uUGGaGGGGCUGGC-CCugGGgacGGAg- -3'
miRNA:   3'- cACC-CUCUGGCCGaGGugCCa--CCUau -5'
29149 5' -59.5 NC_006146.1 + 48632 0.69 0.613015
Target:  5'- cGUGGG-GGCgGGCUCCG-GGcGGGUGc -3'
miRNA:   3'- -CACCCuCUGgCCGAGGUgCCaCCUAU- -5'
29149 5' -59.5 NC_006146.1 + 60491 0.68 0.652977
Target:  5'- -cGGGGGGCCaGCUCCcccgACGGcgaGGGUGc -3'
miRNA:   3'- caCCCUCUGGcCGAGG----UGCCa--CCUAU- -5'
29149 5' -59.5 NC_006146.1 + 62305 0.67 0.692681
Target:  5'- uUGGGuGAaagcuaucuCCGGCUCCcCGG-GGGUGc -3'
miRNA:   3'- cACCCuCU---------GGCCGAGGuGCCaCCUAU- -5'
29149 5' -59.5 NC_006146.1 + 68108 0.66 0.787373
Target:  5'- gGUGGGcGGCCaGCcggUCCGCGGUGa--- -3'
miRNA:   3'- -CACCCuCUGGcCG---AGGUGCCACcuau -5'
29149 5' -59.5 NC_006146.1 + 71153 0.7 0.553609
Target:  5'- uGUGGGugGGACCGGCacuguggCUugGGUGGugGUAg -3'
miRNA:   3'- -CACCC--UCUGGCCGa------GGugCCACC--UAU- -5'
29149 5' -59.5 NC_006146.1 + 74415 0.66 0.76923
Target:  5'- cUGGGAGuuCuGCUCCA-GGUGGGc- -3'
miRNA:   3'- cACCCUCugGcCGAGGUgCCACCUau -5'
29149 5' -59.5 NC_006146.1 + 91679 0.66 0.787373
Target:  5'- uUGGGcGGGCUGaGaCUCUACGGUGGc-- -3'
miRNA:   3'- cACCC-UCUGGC-C-GAGGUGCCACCuau -5'
29149 5' -59.5 NC_006146.1 + 113621 0.69 0.613015
Target:  5'- cUGGGGGACCGucaGCUUgACGGUgcuccgggGGAUGg -3'
miRNA:   3'- cACCCUCUGGC---CGAGgUGCCA--------CCUAU- -5'
29149 5' -59.5 NC_006146.1 + 122227 0.69 0.573269
Target:  5'- -aGGGAGGCCGGCgaagCAUGGgccaGGAUu -3'
miRNA:   3'- caCCCUCUGGCCGag--GUGCCa---CCUAu -5'
29149 5' -59.5 NC_006146.1 + 132406 0.67 0.741162
Target:  5'- -cGGGGGAUggugGGCcagaCACGGUGGGUGu -3'
miRNA:   3'- caCCCUCUGg---CCGag--GUGCCACCUAU- -5'
29149 5' -59.5 NC_006146.1 + 141531 0.72 0.423838
Target:  5'- cUGGGAGGCUGGUUCUggGGcUGGAc- -3'
miRNA:   3'- cACCCUCUGGCCGAGGugCC-ACCUau -5'
29149 5' -59.5 NC_006146.1 + 142351 0.67 0.712277
Target:  5'- -cGGGcAGGCCGGgUCUugGGccugGGAg- -3'
miRNA:   3'- caCCC-UCUGGCCgAGGugCCa---CCUau -5'
29149 5' -59.5 NC_006146.1 + 144609 0.72 0.423838
Target:  5'- cUGGGAGGCUGGUUCUggGGcUGGAc- -3'
miRNA:   3'- cACCCUCUGGCCGAGGugCC-ACCUau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.