miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29149 5' -59.5 NC_006146.1 + 145429 0.67 0.712277
Target:  5'- -cGGGcAGGCCGGgUCUugGGccugGGAg- -3'
miRNA:   3'- caCCC-UCUGGCCgAGGugCCa---CCUau -5'
29149 5' -59.5 NC_006146.1 + 147687 0.68 0.632997
Target:  5'- cUGGGAGGCUGGUU-CugGGcUGGAc- -3'
miRNA:   3'- cACCCUCUGGCCGAgGugCC-ACCUau -5'
29149 5' -59.5 NC_006146.1 + 148507 0.67 0.712277
Target:  5'- -cGGGcAGGCCGGgUCUugGGccugGGAg- -3'
miRNA:   3'- caCCC-UCUGGCCgAGGugCCa---CCUau -5'
29149 5' -59.5 NC_006146.1 + 150764 0.72 0.423838
Target:  5'- cUGGGAGGCUGGUUCUggGGcUGGAc- -3'
miRNA:   3'- cACCCUCUGGCCGAGGugCC-ACCUau -5'
29149 5' -59.5 NC_006146.1 + 151585 0.67 0.712277
Target:  5'- -cGGGcAGGCCGGgUCUugGGccugGGAg- -3'
miRNA:   3'- caCCC-UCUGGCCgAGGugCCa---CCUau -5'
29149 5' -59.5 NC_006146.1 + 153533 0.68 0.682807
Target:  5'- aGUGGGGGGCguggGGCUgCUugggaACGGUGGAg- -3'
miRNA:   3'- -CACCCUCUGg---CCGA-GG-----UGCCACCUau -5'
29149 5' -59.5 NC_006146.1 + 153842 0.72 0.423838
Target:  5'- cUGGGAGGCUGGUUCUggGGcUGGAc- -3'
miRNA:   3'- cACCCUCUGGCCGAGGugCC-ACCUau -5'
29149 5' -59.5 NC_006146.1 + 154663 0.67 0.712277
Target:  5'- -cGGGcAGGCCGGgUCUugGGccugGGAg- -3'
miRNA:   3'- caCCC-UCUGGCCgAGGugCCa---CCUau -5'
29149 5' -59.5 NC_006146.1 + 156920 0.72 0.423838
Target:  5'- cUGGGAGGCUGGUUCUggGGcUGGAc- -3'
miRNA:   3'- cACCCUCUGGCCGAGGugCC-ACCUau -5'
29149 5' -59.5 NC_006146.1 + 157740 0.67 0.712277
Target:  5'- -cGGGcAGGCCGGgUCUugGGccugGGAg- -3'
miRNA:   3'- caCCC-UCUGGCCgAGGugCCa---CCUau -5'
29149 5' -59.5 NC_006146.1 + 160017 0.66 0.781983
Target:  5'- -aGGGccuuGAcguugaugcugaagcCCGGCUCCACGGUGa--- -3'
miRNA:   3'- caCCCu---CU---------------GGCCGAGGUGCCACcuau -5'
29149 5' -59.5 NC_006146.1 + 161717 0.7 0.524518
Target:  5'- cUGGGAGAa-GGCUUgGgGGUGGGUGg -3'
miRNA:   3'- cACCCUCUggCCGAGgUgCCACCUAU- -5'
29149 5' -59.5 NC_006146.1 + 161782 1.07 0.002099
Target:  5'- cGUGGGAGACCGGCUCCACGGUGGAUAg -3'
miRNA:   3'- -CACCCUCUGGCCGAGGUGCCACCUAU- -5'
29149 5' -59.5 NC_006146.1 + 161849 1.07 0.002099
Target:  5'- cGUGGGAGACCGGCUCCACGGUGGAUAg -3'
miRNA:   3'- -CACCCUCUGGCCGAGGUGCCACCUAU- -5'
29149 5' -59.5 NC_006146.1 + 161916 1.07 0.002099
Target:  5'- cGUGGGAGACCGGCUCCACGGUGGAUAg -3'
miRNA:   3'- -CACCCUCUGGCCGAGGUGCCACCUAU- -5'
29149 5' -59.5 NC_006146.1 + 161983 1.07 0.002099
Target:  5'- cGUGGGAGACCGGCUCCACGGUGGAUAg -3'
miRNA:   3'- -CACCCUCUGGCCGAGGUGCCACCUAU- -5'
29149 5' -59.5 NC_006146.1 + 162016 1 0.00621
Target:  5'- cUGGGAGACCGGCUCCACGGUGGAg- -3'
miRNA:   3'- cACCCUCUGGCCGAGGUGCCACCUau -5'
29149 5' -59.5 NC_006146.1 + 162047 0.79 0.173945
Target:  5'- uGUGGGAaACCGGUUCCACcgcgggGGUGGGUGa -3'
miRNA:   3'- -CACCCUcUGGCCGAGGUG------CCACCUAU- -5'
29149 5' -59.5 NC_006146.1 + 162126 0.75 0.280383
Target:  5'- cUGGGGGGCCGuC-CCACGGUGGGa- -3'
miRNA:   3'- cACCCUCUGGCcGaGGUGCCACCUau -5'
29149 5' -59.5 NC_006146.1 + 167181 0.68 0.632997
Target:  5'- -cGGGAGGCCGGCgcgcgCC-CGGggucccgGGGg- -3'
miRNA:   3'- caCCCUCUGGCCGa----GGuGCCa------CCUau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.