miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29149 5' -59.5 NC_006146.1 + 169045 0.68 0.632997
Target:  5'- -cGGGAGGCCGGCgcgcgCC-CGGggucccgGGGg- -3'
miRNA:   3'- caCCCUCUGGCCGa----GGuGCCa------CCUau -5'
29149 5' -59.5 NC_006146.1 + 68108 0.66 0.787373
Target:  5'- gGUGGGcGGCCaGCcggUCCGCGGUGa--- -3'
miRNA:   3'- -CACCCuCUGGcCG---AGGUGCCACcuau -5'
29149 5' -59.5 NC_006146.1 + 132406 0.67 0.741162
Target:  5'- -cGGGGGAUggugGGCcagaCACGGUGGGUGu -3'
miRNA:   3'- caCCCUCUGg---CCGag--GUGCCACCUAU- -5'
29149 5' -59.5 NC_006146.1 + 153533 0.68 0.682807
Target:  5'- aGUGGGGGGCguggGGCUgCUugggaACGGUGGAg- -3'
miRNA:   3'- -CACCCUCUGg---CCGA-GG-----UGCCACCUau -5'
29149 5' -59.5 NC_006146.1 + 160017 0.66 0.781983
Target:  5'- -aGGGccuuGAcguugaugcugaagcCCGGCUCCACGGUGa--- -3'
miRNA:   3'- caCCCu---CU---------------GGCCGAGGUGCCACcuau -5'
29149 5' -59.5 NC_006146.1 + 4200 0.68 0.672892
Target:  5'- -cGGGA-ACCGGCUUCaugACGGUGGu-- -3'
miRNA:   3'- caCCCUcUGGCCGAGG---UGCCACCuau -5'
29149 5' -59.5 NC_006146.1 + 74415 0.66 0.76923
Target:  5'- cUGGGAGuuCuGCUCCA-GGUGGGc- -3'
miRNA:   3'- cACCCUCugGcCGAGGUgCCACCUau -5'
29149 5' -59.5 NC_006146.1 + 154663 0.67 0.712277
Target:  5'- -cGGGcAGGCCGGgUCUugGGccugGGAg- -3'
miRNA:   3'- caCCC-UCUGGCCgAGGugCCa---CCUau -5'
29149 5' -59.5 NC_006146.1 + 151585 0.67 0.712277
Target:  5'- -cGGGcAGGCCGGgUCUugGGccugGGAg- -3'
miRNA:   3'- caCCC-UCUGGCCgAGGugCCa---CCUau -5'
29149 5' -59.5 NC_006146.1 + 157740 0.67 0.712277
Target:  5'- -cGGGcAGGCCGGgUCUugGGccugGGAg- -3'
miRNA:   3'- caCCC-UCUGGCCgAGGugCCa---CCUau -5'
29149 5' -59.5 NC_006146.1 + 142351 0.67 0.712277
Target:  5'- -cGGGcAGGCCGGgUCUugGGccugGGAg- -3'
miRNA:   3'- caCCC-UCUGGCCgAGGugCCa---CCUau -5'
29149 5' -59.5 NC_006146.1 + 169411 0.67 0.692681
Target:  5'- ---cGAGGCCGGCUgCCAUGGUcaGGAg- -3'
miRNA:   3'- caccCUCUGGCCGA-GGUGCCA--CCUau -5'
29149 5' -59.5 NC_006146.1 + 150764 0.72 0.423838
Target:  5'- cUGGGAGGCUGGUUCUggGGcUGGAc- -3'
miRNA:   3'- cACCCUCUGGCCGAGGugCC-ACCUau -5'
29149 5' -59.5 NC_006146.1 + 141531 0.72 0.423838
Target:  5'- cUGGGAGGCUGGUUCUggGGcUGGAc- -3'
miRNA:   3'- cACCCUCUGGCCGAGGugCC-ACCUau -5'
29149 5' -59.5 NC_006146.1 + 36109 0.73 0.366104
Target:  5'- -aGGGGGACCcGCUgCugGGUGGGg- -3'
miRNA:   3'- caCCCUCUGGcCGAgGugCCACCUau -5'
29149 5' -59.5 NC_006146.1 + 147687 0.68 0.632997
Target:  5'- cUGGGAGGCUGGUU-CugGGcUGGAc- -3'
miRNA:   3'- cACCCUCUGGCCGAgGugCC-ACCUau -5'
29149 5' -59.5 NC_006146.1 + 144609 0.72 0.423838
Target:  5'- cUGGGAGGCUGGUUCUggGGcUGGAc- -3'
miRNA:   3'- cACCCUCUGGCCGAGGugCC-ACCUau -5'
29149 5' -59.5 NC_006146.1 + 60491 0.68 0.652977
Target:  5'- -cGGGGGGCCaGCUCCcccgACGGcgaGGGUGc -3'
miRNA:   3'- caCCCUCUGGcCGAGG----UGCCa--CCUAU- -5'
29149 5' -59.5 NC_006146.1 + 26261 0.68 0.662946
Target:  5'- gGUGGGGGcACgGGUggcggaauuagCCugGGUGGAg- -3'
miRNA:   3'- -CACCCUC-UGgCCGa----------GGugCCACCUau -5'
29149 5' -59.5 NC_006146.1 + 62305 0.67 0.692681
Target:  5'- uUGGGuGAaagcuaucuCCGGCUCCcCGG-GGGUGc -3'
miRNA:   3'- cACCCuCU---------GGCCGAGGuGCCaCCUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.