miRNA display CGI


Results 41 - 60 of 308 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29150 3' -57.8 NC_006146.1 + 133695 0.66 0.861531
Target:  5'- -aGAGCAUUCAcguGGGCCagccauugcccACCCGGgCCc -3'
miRNA:   3'- ucCUCGUAGGUu--CCUGG-----------UGGGCCaGG- -5'
29150 3' -57.8 NC_006146.1 + 114484 0.66 0.861531
Target:  5'- cGGGGGCAUgacgCUuAGG-CU-CCCGGUCCc -3'
miRNA:   3'- -UCCUCGUA----GGuUCCuGGuGGGCCAGG- -5'
29150 3' -57.8 NC_006146.1 + 43699 0.66 0.860786
Target:  5'- aAGGccacuacGGCGUCCAGguccuggcGGAuuuccuCCGCCCGGgCCa -3'
miRNA:   3'- -UCC-------UCGUAGGUU--------CCU------GGUGGGCCaGG- -5'
29150 3' -57.8 NC_006146.1 + 123361 0.66 0.860039
Target:  5'- aGGGAGCucuggcgcuggCCGGGGGCCccgcaACCUGG-CUg -3'
miRNA:   3'- -UCCUCGua---------GGUUCCUGG-----UGGGCCaGG- -5'
29150 3' -57.8 NC_006146.1 + 167629 0.66 0.856276
Target:  5'- gGGGGGgGUCCcgcGGGGCCcggcgcgugccggggGCCCGGgggcgugUCCc -3'
miRNA:   3'- -UCCUCgUAGGu--UCCUGG---------------UGGGCC-------AGG- -5'
29150 3' -57.8 NC_006146.1 + 41804 0.66 0.853995
Target:  5'- --uAGCcgCCu-GGAUuugCACCCGGUCCc -3'
miRNA:   3'- uccUCGuaGGuuCCUG---GUGGGCCAGG- -5'
29150 3' -57.8 NC_006146.1 + 61498 0.66 0.853995
Target:  5'- cAGG-GC-UCCGAGGaggccccuGCCGCCCuGUCa -3'
miRNA:   3'- -UCCuCGuAGGUUCC--------UGGUGGGcCAGg -5'
29150 3' -57.8 NC_006146.1 + 55291 0.66 0.850927
Target:  5'- -uGGGCAUCCAcacgcAGGACUucuucagcgucuuCCCGG-CCg -3'
miRNA:   3'- ucCUCGUAGGU-----UCCUGGu------------GGGCCaGG- -5'
29150 3' -57.8 NC_006146.1 + 49677 0.66 0.849381
Target:  5'- gGGGGGCuauggcggcgucGuccuccuccacccucUCCAGGGGCCACggaaugCCGGUCa -3'
miRNA:   3'- -UCCUCG------------U---------------AGGUUCCUGGUG------GGCCAGg -5'
29150 3' -57.8 NC_006146.1 + 157632 0.66 0.846267
Target:  5'- gAGGGGC-UCUggGGcGCCGguccCCUGGUUCc -3'
miRNA:   3'- -UCCUCGuAGGuuCC-UGGU----GGGCCAGG- -5'
29150 3' -57.8 NC_006146.1 + 154554 0.66 0.846267
Target:  5'- gAGGGGC-UCUggGGcGCCGguccCCUGGUUCc -3'
miRNA:   3'- -UCCUCGuAGGuuCC-UGGU----GGGCCAGG- -5'
29150 3' -57.8 NC_006146.1 + 126492 0.66 0.846267
Target:  5'- cGGGAGCcccUCGAGGaaggcGCCguGCCCGGcCCc -3'
miRNA:   3'- -UCCUCGua-GGUUCC-----UGG--UGGGCCaGG- -5'
29150 3' -57.8 NC_006146.1 + 33305 0.66 0.846267
Target:  5'- cAGGGGCA-CCc--GGCC-CCCGGcCCg -3'
miRNA:   3'- -UCCUCGUaGGuucCUGGuGGGCCaGG- -5'
29150 3' -57.8 NC_006146.1 + 151476 0.66 0.846267
Target:  5'- gAGGGGC-UCUggGGcGCCGguccCCUGGUUCc -3'
miRNA:   3'- -UCCUCGuAGGuuCC-UGGU----GGGCCAGG- -5'
29150 3' -57.8 NC_006146.1 + 145320 0.66 0.846267
Target:  5'- gAGGGGC-UCUggGGcGCCGguccCCUGGUUCc -3'
miRNA:   3'- -UCCUCGuAGGuuCC-UGGU----GGGCCAGG- -5'
29150 3' -57.8 NC_006146.1 + 142242 0.66 0.846267
Target:  5'- gAGGGGC-UCUggGGcGCCGguccCCUGGUUCc -3'
miRNA:   3'- -UCCUCGuAGGuuCC-UGGU----GGGCCAGG- -5'
29150 3' -57.8 NC_006146.1 + 5244 0.66 0.846267
Target:  5'- cGGGGCugugggGUCCAcGGACCcaacGCCCGaG-CCg -3'
miRNA:   3'- uCCUCG------UAGGUuCCUGG----UGGGC-CaGG- -5'
29150 3' -57.8 NC_006146.1 + 148398 0.66 0.846267
Target:  5'- gAGGGGC-UCUggGGcGCCGguccCCUGGUUCc -3'
miRNA:   3'- -UCCUCGuAGGuuCC-UGGU----GGGCCAGG- -5'
29150 3' -57.8 NC_006146.1 + 117036 0.67 0.841541
Target:  5'- cGGGGGCG-CUGAGGGCCAgcgucgccuaccgccUCCGGgaCCa -3'
miRNA:   3'- -UCCUCGUaGGUUCCUGGU---------------GGGCCa-GG- -5'
29150 3' -57.8 NC_006146.1 + 33171 0.67 0.841541
Target:  5'- cAGGAGC-UCCAgaaccggguaggcccGGGcACC-CCCGGggggaggCCg -3'
miRNA:   3'- -UCCUCGuAGGU---------------UCC-UGGuGGGCCa------GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.