miRNA display CGI


Results 21 - 40 of 308 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29150 3' -57.8 NC_006146.1 + 72544 0.66 0.875301
Target:  5'- gGGGAGCcacguguGUCUccuGGACCgggacgggccgcGCCCGGcCCc -3'
miRNA:   3'- -UCCUCG-------UAGGuu-CCUGG------------UGGGCCaGG- -5'
29150 3' -57.8 NC_006146.1 + 68511 0.66 0.871749
Target:  5'- aGGGAcagauaccaccaGCuccCCGAGGACCcggagaccuuugaguGCCCGGaCCg -3'
miRNA:   3'- -UCCU------------CGua-GGUUCCUGG---------------UGGGCCaGG- -5'
29150 3' -57.8 NC_006146.1 + 11161 0.66 0.871749
Target:  5'- cGGAgGCAUUCAAGGAgCGCCUcuacggggggaaccuGGUggCCa -3'
miRNA:   3'- uCCU-CGUAGGUUCCUgGUGGG---------------CCA--GG- -5'
29150 3' -57.8 NC_006146.1 + 13259 0.66 0.868869
Target:  5'- cAGGGGgAaCCAgGGGACCggcGCCCcagagccccucgGGUCCg -3'
miRNA:   3'- -UCCUCgUaGGU-UCCUGG---UGGG------------CCAGG- -5'
29150 3' -57.8 NC_006146.1 + 16337 0.66 0.868869
Target:  5'- cAGGGGgAaCCAgGGGACCggcGCCCcagagccccucgGGUCCg -3'
miRNA:   3'- -UCCUCgUaGGU-UCCUGG---UGGG------------CCAGG- -5'
29150 3' -57.8 NC_006146.1 + 19415 0.66 0.868869
Target:  5'- cAGGGGgAaCCAgGGGACCggcGCCCcagagccccucgGGUCCg -3'
miRNA:   3'- -UCCUCgUaGGU-UCCUGG---UGGG------------CCAGG- -5'
29150 3' -57.8 NC_006146.1 + 22493 0.66 0.868869
Target:  5'- cAGGGGgAaCCAgGGGACCggcGCCCcagagccccucgGGUCCg -3'
miRNA:   3'- -UCCUCgUaGGU-UCCUGG---UGGG------------CCAGG- -5'
29150 3' -57.8 NC_006146.1 + 47839 0.66 0.868869
Target:  5'- -aGAGCGcggcUCuCGAGGACCcucuccuccagcGCCCGGaCCu -3'
miRNA:   3'- ucCUCGU----AG-GUUCCUGG------------UGGGCCaGG- -5'
29150 3' -57.8 NC_006146.1 + 63125 0.66 0.868869
Target:  5'- cAGGuGCc-CCuGGGACCugCUGG-CCa -3'
miRNA:   3'- -UCCuCGuaGGuUCCUGGugGGCCaGG- -5'
29150 3' -57.8 NC_006146.1 + 28649 0.66 0.868869
Target:  5'- cAGGGGgAaCCAgGGGACCggcGCCCcagagccccucgGGUCCg -3'
miRNA:   3'- -UCCUCgUaGGU-UCCUGG---UGGG------------CCAGG- -5'
29150 3' -57.8 NC_006146.1 + 116241 0.66 0.868869
Target:  5'- uGGGAG-GUCUAcgacGGGGCCccuccaauGCCCGGggagCCa -3'
miRNA:   3'- -UCCUCgUAGGU----UCCUGG--------UGGGCCa---GG- -5'
29150 3' -57.8 NC_006146.1 + 43246 0.66 0.868869
Target:  5'- uGGAGCAgcagauagcCCAccgagaggcacAGGGCgGCCUggaGGUCCg -3'
miRNA:   3'- uCCUCGUa--------GGU-----------UCCUGgUGGG---CCAGG- -5'
29150 3' -57.8 NC_006146.1 + 99473 0.66 0.868869
Target:  5'- cGGGGGCAaCUAAGGucACCACCa--UCCu -3'
miRNA:   3'- -UCCUCGUaGGUUCC--UGGUGGgccAGG- -5'
29150 3' -57.8 NC_006146.1 + 25571 0.66 0.868869
Target:  5'- cAGGGGgAaCCAgGGGACCggcGCCCcagagccccucgGGUCCg -3'
miRNA:   3'- -UCCUCgUaGGU-UCCUGG---UGGG------------CCAGG- -5'
29150 3' -57.8 NC_006146.1 + 48340 0.66 0.867418
Target:  5'- uGGGccaGGCGUCCAGucuggccagcgggccGGccucgaguuccgcgaACCACCCGGgcUCCg -3'
miRNA:   3'- -UCC---UCGUAGGUU---------------CC---------------UGGUGGGCC--AGG- -5'
29150 3' -57.8 NC_006146.1 + 127156 0.66 0.861531
Target:  5'- uGGAcgGCGUCaugcGcGACCACCUGGcCCg -3'
miRNA:   3'- uCCU--CGUAGguu-C-CUGGUGGGCCaGG- -5'
29150 3' -57.8 NC_006146.1 + 133695 0.66 0.861531
Target:  5'- -aGAGCAUUCAcguGGGCCagccauugcccACCCGGgCCc -3'
miRNA:   3'- ucCUCGUAGGUu--CCUGG-----------UGGGCCaGG- -5'
29150 3' -57.8 NC_006146.1 + 27950 0.66 0.861531
Target:  5'- uGGcauGCAUUCAAGGGCCACUCcucugaGUCg -3'
miRNA:   3'- uCCu--CGUAGGUUCCUGGUGGGc-----CAGg -5'
29150 3' -57.8 NC_006146.1 + 114484 0.66 0.861531
Target:  5'- cGGGGGCAUgacgCUuAGG-CU-CCCGGUCCc -3'
miRNA:   3'- -UCCUCGUA----GGuUCCuGGuGGGCCAGG- -5'
29150 3' -57.8 NC_006146.1 + 3855 0.66 0.861531
Target:  5'- gGGGGGUcgCCcuGGACCACUuuUGGgacacUCCu -3'
miRNA:   3'- -UCCUCGuaGGuuCCUGGUGG--GCC-----AGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.