Results 21 - 40 of 308 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29150 | 3' | -57.8 | NC_006146.1 | + | 136384 | 0.75 | 0.374014 |
Target: 5'- uGGAGCucggggCCGGGGGCCggguGCCCcugGGUCCg -3' miRNA: 3'- uCCUCGua----GGUUCCUGG----UGGG---CCAGG- -5' |
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29150 | 3' | -57.8 | NC_006146.1 | + | 137034 | 0.75 | 0.374014 |
Target: 5'- uGGAGCucggggCCGGGGGCCggguGCCCcugGGUCCg -3' miRNA: 3'- uCCUCGua----GGUUCCUGG----UGGG---CCAGG- -5' |
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29150 | 3' | -57.8 | NC_006146.1 | + | 137406 | 0.75 | 0.374014 |
Target: 5'- uGGAGCucggggCCGGGGGCCggguGCCCcugGGUCCg -3' miRNA: 3'- uCCUCGua----GGUUCCUGG----UGGG---CCAGG- -5' |
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29150 | 3' | -57.8 | NC_006146.1 | + | 136477 | 0.75 | 0.374014 |
Target: 5'- uGGAGCucggggCCGGGGGCCggguGCCCcugGGUCCg -3' miRNA: 3'- uCCUCGua----GGUUCCUGG----UGGG---CCAGG- -5' |
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29150 | 3' | -57.8 | NC_006146.1 | + | 136291 | 0.75 | 0.374014 |
Target: 5'- uGGAGCucggggCCGGGGGCCggguGCCCcugGGUCCg -3' miRNA: 3'- uCCUCGua----GGUUCCUGG----UGGG---CCAGG- -5' |
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29150 | 3' | -57.8 | NC_006146.1 | + | 136755 | 0.75 | 0.374014 |
Target: 5'- uGGAGCucggggCCGGGGGCCggguGCCCcugGGUCCg -3' miRNA: 3'- uCCUCGua----GGUUCCUGG----UGGG---CCAGG- -5' |
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29150 | 3' | -57.8 | NC_006146.1 | + | 135362 | 0.75 | 0.374014 |
Target: 5'- uGGAGCucggggCCGGGGGCCggguGCCCcugGGUCCg -3' miRNA: 3'- uCCUCGua----GGUUCCUGG----UGGG---CCAGG- -5' |
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29150 | 3' | -57.8 | NC_006146.1 | + | 135176 | 0.75 | 0.374014 |
Target: 5'- uGGAGCucggggCCGGGGGCCggguGCCCcugGGUCCg -3' miRNA: 3'- uCCUCGua----GGUUCCUGG----UGGG---CCAGG- -5' |
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29150 | 3' | -57.8 | NC_006146.1 | + | 135269 | 0.75 | 0.374014 |
Target: 5'- uGGAGCucggggCCGGGGGCCggguGCCCcugGGUCCg -3' miRNA: 3'- uCCUCGua----GGUUCCUGG----UGGG---CCAGG- -5' |
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29150 | 3' | -57.8 | NC_006146.1 | + | 135455 | 0.75 | 0.374014 |
Target: 5'- uGGAGCucggggCCGGGGGCCggguGCCCcugGGUCCg -3' miRNA: 3'- uCCUCGua----GGUUCCUGG----UGGG---CCAGG- -5' |
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29150 | 3' | -57.8 | NC_006146.1 | + | 135548 | 0.75 | 0.374014 |
Target: 5'- uGGAGCucggggCCGGGGGCCggguGCCCcugGGUCCg -3' miRNA: 3'- uCCUCGua----GGUUCCUGG----UGGG---CCAGG- -5' |
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29150 | 3' | -57.8 | NC_006146.1 | + | 136198 | 0.75 | 0.374014 |
Target: 5'- uGGAGCucggggCCGGGGGCCggguGCCCcugGGUCCg -3' miRNA: 3'- uCCUCGua----GGUUCCUGG----UGGG---CCAGG- -5' |
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29150 | 3' | -57.8 | NC_006146.1 | + | 137220 | 0.75 | 0.374014 |
Target: 5'- uGGAGCucggggCCGGGGGCCggguGCCCcugGGUCCg -3' miRNA: 3'- uCCUCGua----GGUUCCUGG----UGGG---CCAGG- -5' |
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29150 | 3' | -57.8 | NC_006146.1 | + | 135641 | 0.75 | 0.374014 |
Target: 5'- uGGAGCucggggCCGGGGGCCggguGCCCcugGGUCCg -3' miRNA: 3'- uCCUCGua----GGUUCCUGG----UGGG---CCAGG- -5' |
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29150 | 3' | -57.8 | NC_006146.1 | + | 135919 | 0.75 | 0.374014 |
Target: 5'- uGGAGCucggggCCGGGGGCCggguGCCCcugGGUCCg -3' miRNA: 3'- uCCUCGua----GGUUCCUGG----UGGG---CCAGG- -5' |
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29150 | 3' | -57.8 | NC_006146.1 | + | 47527 | 0.75 | 0.406789 |
Target: 5'- cGGcAGUGUCgGGGGcGCCGCCuCGGUCCu -3' miRNA: 3'- uCC-UCGUAGgUUCC-UGGUGG-GCCAGG- -5' |
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29150 | 3' | -57.8 | NC_006146.1 | + | 34962 | 0.74 | 0.41526 |
Target: 5'- cGGGGCAgcggacCCAGGGG-CACCCGGcCCc -3' miRNA: 3'- uCCUCGUa-----GGUUCCUgGUGGGCCaGG- -5' |
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29150 | 3' | -57.8 | NC_006146.1 | + | 34777 | 0.74 | 0.41526 |
Target: 5'- cGGGGCAgcggacCCAGGGG-CACCCGGcCCc -3' miRNA: 3'- uCCUCGUa-----GGUUCCUgGUGGGCCaGG- -5' |
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29150 | 3' | -57.8 | NC_006146.1 | + | 34870 | 0.74 | 0.41526 |
Target: 5'- cGGGGCAgcggacCCAGGGG-CACCCGGcCCc -3' miRNA: 3'- uCCUCGUa-----GGUUCCUgGUGGGCCaGG- -5' |
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29150 | 3' | -57.8 | NC_006146.1 | + | 35148 | 0.74 | 0.41526 |
Target: 5'- cGGGGCAgcggacCCAGGGG-CACCCGGcCCc -3' miRNA: 3'- uCCUCGUa-----GGUUCCUgGUGGGCCaGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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