Results 1 - 20 of 308 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29150 | 3' | -57.8 | NC_006146.1 | + | 164406 | 1.11 | 0.001689 |
Target: 5'- cAGGAGCAUCCAAGGACCACCCGGUCCu -3' miRNA: 3'- -UCCUCGUAGGUUCCUGGUGGGCCAGG- -5' |
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29150 | 3' | -57.8 | NC_006146.1 | + | 49916 | 0.81 | 0.178282 |
Target: 5'- cGGAgGCcgCCGAGG-CCACUCGGUCCc -3' miRNA: 3'- uCCU-CGuaGGUUCCuGGUGGGCCAGG- -5' |
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29150 | 3' | -57.8 | NC_006146.1 | + | 33226 | 0.76 | 0.335636 |
Target: 5'- cGGGGCAgCCGGGuGGCCGCCggcgGGUCCg -3' miRNA: 3'- uCCUCGUaGGUUC-CUGGUGGg---CCAGG- -5' |
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29150 | 3' | -57.8 | NC_006146.1 | + | 33348 | 0.76 | 0.335636 |
Target: 5'- cGGGGCAgCCGGGuGGCCGCCggugGGUCCg -3' miRNA: 3'- uCCUCGUaGGUUC-CUGGUGGg---CCAGG- -5' |
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29150 | 3' | -57.8 | NC_006146.1 | + | 137592 | 0.76 | 0.343076 |
Target: 5'- uGGAGCucgggCCGGGGGCCggguGCCCcugGGUCCg -3' miRNA: 3'- uCCUCGua---GGUUCCUGG----UGGG---CCAGG- -5' |
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29150 | 3' | -57.8 | NC_006146.1 | + | 137700 | 0.76 | 0.358311 |
Target: 5'- cGGAGCA-CC-AGGAgCACCCGGaggCCa -3' miRNA: 3'- uCCUCGUaGGuUCCUgGUGGGCCa--GG- -5' |
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29150 | 3' | -57.8 | NC_006146.1 | + | 86519 | 0.76 | 0.358311 |
Target: 5'- cGGAGg--CCAugauGGCCGCCCGGUCCa -3' miRNA: 3'- uCCUCguaGGUuc--CUGGUGGGCCAGG- -5' |
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29150 | 3' | -57.8 | NC_006146.1 | + | 42389 | 0.75 | 0.366104 |
Target: 5'- gAGGGGCGcCCcAGGGCCACCCcgacgccGUCCu -3' miRNA: 3'- -UCCUCGUaGGuUCCUGGUGGGc------CAGG- -5' |
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29150 | 3' | -57.8 | NC_006146.1 | + | 7715 | 0.75 | 0.366104 |
Target: 5'- gAGGGGCAgaagCCAAGccACUGCCCGGUCa -3' miRNA: 3'- -UCCUCGUa---GGUUCc-UGGUGGGCCAGg -5' |
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29150 | 3' | -57.8 | NC_006146.1 | + | 135826 | 0.75 | 0.374014 |
Target: 5'- uGGAGCucggggCCGGGGGCCggguGCCCcugGGUCCg -3' miRNA: 3'- uCCUCGua----GGUUCCUGG----UGGG---CCAGG- -5' |
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29150 | 3' | -57.8 | NC_006146.1 | + | 135269 | 0.75 | 0.374014 |
Target: 5'- uGGAGCucggggCCGGGGGCCggguGCCCcugGGUCCg -3' miRNA: 3'- uCCUCGua----GGUUCCUGG----UGGG---CCAGG- -5' |
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29150 | 3' | -57.8 | NC_006146.1 | + | 135176 | 0.75 | 0.374014 |
Target: 5'- uGGAGCucggggCCGGGGGCCggguGCCCcugGGUCCg -3' miRNA: 3'- uCCUCGua----GGUUCCUGG----UGGG---CCAGG- -5' |
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29150 | 3' | -57.8 | NC_006146.1 | + | 135733 | 0.75 | 0.374014 |
Target: 5'- uGGAGCucggggCCGGGGGCCggguGCCCcugGGUCCg -3' miRNA: 3'- uCCUCGua----GGUUCCUGG----UGGG---CCAGG- -5' |
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29150 | 3' | -57.8 | NC_006146.1 | + | 135641 | 0.75 | 0.374014 |
Target: 5'- uGGAGCucggggCCGGGGGCCggguGCCCcugGGUCCg -3' miRNA: 3'- uCCUCGua----GGUUCCUGG----UGGG---CCAGG- -5' |
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29150 | 3' | -57.8 | NC_006146.1 | + | 135919 | 0.75 | 0.374014 |
Target: 5'- uGGAGCucggggCCGGGGGCCggguGCCCcugGGUCCg -3' miRNA: 3'- uCCUCGua----GGUUCCUGG----UGGG---CCAGG- -5' |
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29150 | 3' | -57.8 | NC_006146.1 | + | 136012 | 0.75 | 0.374014 |
Target: 5'- uGGAGCucggggCCGGGGGCCggguGCCCcugGGUCCg -3' miRNA: 3'- uCCUCGua----GGUUCCUGG----UGGG---CCAGG- -5' |
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29150 | 3' | -57.8 | NC_006146.1 | + | 135548 | 0.75 | 0.374014 |
Target: 5'- uGGAGCucggggCCGGGGGCCggguGCCCcugGGUCCg -3' miRNA: 3'- uCCUCGua----GGUUCCUGG----UGGG---CCAGG- -5' |
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29150 | 3' | -57.8 | NC_006146.1 | + | 135362 | 0.75 | 0.374014 |
Target: 5'- uGGAGCucggggCCGGGGGCCggguGCCCcugGGUCCg -3' miRNA: 3'- uCCUCGua----GGUUCCUGG----UGGG---CCAGG- -5' |
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29150 | 3' | -57.8 | NC_006146.1 | + | 135455 | 0.75 | 0.374014 |
Target: 5'- uGGAGCucggggCCGGGGGCCggguGCCCcugGGUCCg -3' miRNA: 3'- uCCUCGua----GGUUCCUGG----UGGG---CCAGG- -5' |
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29150 | 3' | -57.8 | NC_006146.1 | + | 136105 | 0.75 | 0.374014 |
Target: 5'- uGGAGCucggggCCGGGGGCCggguGCCCcugGGUCCg -3' miRNA: 3'- uCCUCGua----GGUUCCUGG----UGGG---CCAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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