miRNA display CGI


Results 1 - 20 of 308 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29150 3' -57.8 NC_006146.1 + 578 0.69 0.692682
Target:  5'- cAGGAGaggggCCGGGGGCgCgGCCCGGcgCCa -3'
miRNA:   3'- -UCCUCgua--GGUUCCUG-G-UGGGCCa-GG- -5'
29150 3' -57.8 NC_006146.1 + 1152 0.66 0.876005
Target:  5'- -cGAGgGUCCccGGGCCGcCCCGGggcUCCc -3'
miRNA:   3'- ucCUCgUAGGuuCCUGGU-GGGCC---AGG- -5'
29150 3' -57.8 NC_006146.1 + 1509 0.69 0.692682
Target:  5'- cAGGAGaggggCCGGGGGCgCgGCCCGGcgCCa -3'
miRNA:   3'- -UCCUCgua--GGUUCCUG-G-UGGGCCa-GG- -5'
29150 3' -57.8 NC_006146.1 + 2084 0.66 0.876005
Target:  5'- -cGAGgGUCCccGGGCCGcCCCGGggcUCCc -3'
miRNA:   3'- ucCUCgUAGGuuCCUGGU-GGGCC---AGG- -5'
29150 3' -57.8 NC_006146.1 + 2375 0.68 0.778364
Target:  5'- cGGGAcagGCGUCCGcgggcuuccagAGGGCuCugUUGGUCCc -3'
miRNA:   3'- -UCCU---CGUAGGU-----------UCCUG-GugGGCCAGG- -5'
29150 3' -57.8 NC_006146.1 + 2441 0.69 0.692682
Target:  5'- cAGGAGaggggCCGGGGGCgCgGCCCGGcgCCa -3'
miRNA:   3'- -UCCUCgua--GGUUCCUG-G-UGGGCCa-GG- -5'
29150 3' -57.8 NC_006146.1 + 2630 0.69 0.691696
Target:  5'- uGGAGCAcggcuucgUCCAcacggcgGGGACCAUCCaGcCCa -3'
miRNA:   3'- uCCUCGU--------AGGU-------UCCUGGUGGGcCaGG- -5'
29150 3' -57.8 NC_006146.1 + 3016 0.66 0.876005
Target:  5'- -cGAGgGUCCccGGGCCGcCCCGGggcUCCc -3'
miRNA:   3'- ucCUCgUAGGuuCCUGGU-GGGCC---AGG- -5'
29150 3' -57.8 NC_006146.1 + 3373 0.69 0.692682
Target:  5'- cAGGAGaggggCCGGGGGCgCgGCCCGGcgCCa -3'
miRNA:   3'- -UCCUCgua--GGUUCCUG-G-UGGGCCa-GG- -5'
29150 3' -57.8 NC_006146.1 + 3725 0.66 0.882933
Target:  5'- cAGG-GUcUCUggGGGCCGCgUGGcCCu -3'
miRNA:   3'- -UCCuCGuAGGuuCCUGGUGgGCCaGG- -5'
29150 3' -57.8 NC_006146.1 + 3855 0.66 0.861531
Target:  5'- gGGGGGUcgCCcuGGACCACUuuUGGgacacUCCu -3'
miRNA:   3'- -UCCUCGuaGGuuCCUGGUGG--GCC-----AGG- -5'
29150 3' -57.8 NC_006146.1 + 5244 0.66 0.846267
Target:  5'- cGGGGCugugggGUCCAcGGACCcaacGCCCGaG-CCg -3'
miRNA:   3'- uCCUCG------UAGGUuCCUGG----UGGGC-CaGG- -5'
29150 3' -57.8 NC_006146.1 + 7715 0.75 0.366104
Target:  5'- gAGGGGCAgaagCCAAGccACUGCCCGGUCa -3'
miRNA:   3'- -UCCUCGUa---GGUUCc-UGGUGGGCCAGg -5'
29150 3' -57.8 NC_006146.1 + 9009 0.66 0.882933
Target:  5'- cGGGGCGUugcCCAaaAGGGaaGCCgGGUCUc -3'
miRNA:   3'- uCCUCGUA---GGU--UCCUggUGGgCCAGG- -5'
29150 3' -57.8 NC_006146.1 + 9076 0.67 0.81357
Target:  5'- cGGGGCGUggcCCAaaAGGAaaGCCgGGUCUc -3'
miRNA:   3'- uCCUCGUA---GGU--UCCUggUGGgCCAGG- -5'
29150 3' -57.8 NC_006146.1 + 10118 0.69 0.741162
Target:  5'- uGGAGgAuUUCAAGGGCUACCUGGgaugUCa -3'
miRNA:   3'- uCCUCgU-AGGUUCCUGGUGGGCCa---GG- -5'
29150 3' -57.8 NC_006146.1 + 11161 0.66 0.871749
Target:  5'- cGGAgGCAUUCAAGGAgCGCCUcuacggggggaaccuGGUggCCa -3'
miRNA:   3'- uCCU-CGUAGGUUCCUgGUGGG---------------CCA--GG- -5'
29150 3' -57.8 NC_006146.1 + 12362 0.69 0.731613
Target:  5'- aAGGAGCc-CCAGGGACC-CCgGGaCUu -3'
miRNA:   3'- -UCCUCGuaGGUUCCUGGuGGgCCaGG- -5'
29150 3' -57.8 NC_006146.1 + 12771 0.7 0.672893
Target:  5'- cGGcGGGCG-CCAccAGGucccaaCACCCGGUCCc -3'
miRNA:   3'- -UC-CUCGUaGGU--UCCug----GUGGGCCAGG- -5'
29150 3' -57.8 NC_006146.1 + 12999 0.7 0.672893
Target:  5'- gGGGAGUGgagGGGGAUCGCCCgGGUCUc -3'
miRNA:   3'- -UCCUCGUaggUUCCUGGUGGG-CCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.