miRNA display CGI


Results 1 - 20 of 308 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29150 3' -57.8 NC_006146.1 + 164406 1.11 0.001689
Target:  5'- cAGGAGCAUCCAAGGACCACCCGGUCCu -3'
miRNA:   3'- -UCCUCGUAGGUUCCUGGUGGGCCAGG- -5'
29150 3' -57.8 NC_006146.1 + 136198 0.75 0.374014
Target:  5'- uGGAGCucggggCCGGGGGCCggguGCCCcugGGUCCg -3'
miRNA:   3'- uCCUCGua----GGUUCCUGG----UGGG---CCAGG- -5'
29150 3' -57.8 NC_006146.1 + 136384 0.75 0.374014
Target:  5'- uGGAGCucggggCCGGGGGCCggguGCCCcugGGUCCg -3'
miRNA:   3'- uCCUCGua----GGUUCCUGG----UGGG---CCAGG- -5'
29150 3' -57.8 NC_006146.1 + 70676 0.66 0.882933
Target:  5'- cGGGAGgugaugaucacuCAggCCAcGGGCCGCCUGGUg- -3'
miRNA:   3'- -UCCUC------------GUa-GGUuCCUGGUGGGCCAgg -5'
29150 3' -57.8 NC_006146.1 + 137592 0.76 0.343076
Target:  5'- uGGAGCucgggCCGGGGGCCggguGCCCcugGGUCCg -3'
miRNA:   3'- uCCUCGua---GGUUCCUGG----UGGG---CCAGG- -5'
29150 3' -57.8 NC_006146.1 + 86519 0.76 0.358311
Target:  5'- cGGAGg--CCAugauGGCCGCCCGGUCCa -3'
miRNA:   3'- uCCUCguaGGUuc--CUGGUGGGCCAGG- -5'
29150 3' -57.8 NC_006146.1 + 135269 0.75 0.374014
Target:  5'- uGGAGCucggggCCGGGGGCCggguGCCCcugGGUCCg -3'
miRNA:   3'- uCCUCGua----GGUUCCUGG----UGGG---CCAGG- -5'
29150 3' -57.8 NC_006146.1 + 135362 0.75 0.374014
Target:  5'- uGGAGCucggggCCGGGGGCCggguGCCCcugGGUCCg -3'
miRNA:   3'- uCCUCGua----GGUUCCUGG----UGGG---CCAGG- -5'
29150 3' -57.8 NC_006146.1 + 135641 0.75 0.374014
Target:  5'- uGGAGCucggggCCGGGGGCCggguGCCCcugGGUCCg -3'
miRNA:   3'- uCCUCGua----GGUUCCUGG----UGGG---CCAGG- -5'
29150 3' -57.8 NC_006146.1 + 136105 0.75 0.374014
Target:  5'- uGGAGCucggggCCGGGGGCCggguGCCCcugGGUCCg -3'
miRNA:   3'- uCCUCGua----GGUUCCUGG----UGGG---CCAGG- -5'
29150 3' -57.8 NC_006146.1 + 135826 0.75 0.374014
Target:  5'- uGGAGCucggggCCGGGGGCCggguGCCCcugGGUCCg -3'
miRNA:   3'- uCCUCGua----GGUUCCUGG----UGGG---CCAGG- -5'
29150 3' -57.8 NC_006146.1 + 135548 0.75 0.374014
Target:  5'- uGGAGCucggggCCGGGGGCCggguGCCCcugGGUCCg -3'
miRNA:   3'- uCCUCGua----GGUUCCUGG----UGGG---CCAGG- -5'
29150 3' -57.8 NC_006146.1 + 49916 0.81 0.178282
Target:  5'- cGGAgGCcgCCGAGG-CCACUCGGUCCc -3'
miRNA:   3'- uCCU-CGuaGGUUCCuGGUGGGCCAGG- -5'
29150 3' -57.8 NC_006146.1 + 135919 0.75 0.374014
Target:  5'- uGGAGCucggggCCGGGGGCCggguGCCCcugGGUCCg -3'
miRNA:   3'- uCCUCGua----GGUUCCUGG----UGGG---CCAGG- -5'
29150 3' -57.8 NC_006146.1 + 33226 0.76 0.335636
Target:  5'- cGGGGCAgCCGGGuGGCCGCCggcgGGUCCg -3'
miRNA:   3'- uCCUCGUaGGUUC-CUGGUGGg---CCAGG- -5'
29150 3' -57.8 NC_006146.1 + 135455 0.75 0.374014
Target:  5'- uGGAGCucggggCCGGGGGCCggguGCCCcugGGUCCg -3'
miRNA:   3'- uCCUCGua----GGUUCCUGG----UGGG---CCAGG- -5'
29150 3' -57.8 NC_006146.1 + 136012 0.75 0.374014
Target:  5'- uGGAGCucggggCCGGGGGCCggguGCCCcugGGUCCg -3'
miRNA:   3'- uCCUCGua----GGUUCCUGG----UGGG---CCAGG- -5'
29150 3' -57.8 NC_006146.1 + 136291 0.75 0.374014
Target:  5'- uGGAGCucggggCCGGGGGCCggguGCCCcugGGUCCg -3'
miRNA:   3'- uCCUCGua----GGUUCCUGG----UGGG---CCAGG- -5'
29150 3' -57.8 NC_006146.1 + 33348 0.76 0.335636
Target:  5'- cGGGGCAgCCGGGuGGCCGCCggugGGUCCg -3'
miRNA:   3'- uCCUCGUaGGUUC-CUGGUGGg---CCAGG- -5'
29150 3' -57.8 NC_006146.1 + 135176 0.75 0.374014
Target:  5'- uGGAGCucggggCCGGGGGCCggguGCCCcugGGUCCg -3'
miRNA:   3'- uCCUCGua----GGUUCCUGG----UGGG---CCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.